Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014809.1 Corchorus capsularis cultivar CVL-1 contig14830, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3751
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1619 original size:23 final size:23

Alignment explanation


    Indices: 1589--1647  Score: 91
    Period size: 23  Copynumber: 2.6  Consensus size: 23

       1579 CACCACCGCG

                      *        *   
       1589 CCATGCCCGGGCTCGTCCGTGCA
          1 CCATGCCCGGCCTCGTCCGCGCA

                         *         
       1612 CCATGCCCGGCCTTGTCCGCGCA
          1 CCATGCCCGGCCTCGTCCGCGCA

                         
       1635 CCATGCCCGGCCT
          1 CCATGCCCGGCCT

       1648 ATACCATGCC


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  23   33  1.00

ACGTcount: A:0.08, C:0.47, G:0.27, T:0.17


Consensus pattern (23 bp):   
CCATGCCCGGCCTCGTCCGCGCA
Done.