Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014813.1 Corchorus capsularis cultivar CVL-1 contig14834, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12676

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123--172
25
2.0
25
92
0
82
42
20
24
14
1.88
2691--2728
19
2.1
18
90
5
58
31
21
2
44
1.66
2707--2738
11
2.9
11
90
0
55
43
18
0
37
1.51
2679--2738
22
2.9
22
76
19
65
36
18
3
41
1.67
4231--4259
12
2.3
13
94
5
51
55
20
6
17
1.65
5628--5668
15
2.7
15
92
0
64
9
26
19
43
1.82
6695--6724
16
1.9
15
93
6
51
26
0
6
66
1.16
6745--6784
20
2.0
20
95
0
71
22
15
7
55
1.65
9176--9209
8
4.1
8
85
7
50
58
14
2
23
1.50
10699--10791
33
2.8
33
83
0
114
26
9
19
44
1.82
10817--11024
33
6.3
33
96
0
371
26
10
18
44
1.81

Tables:   1

The End!