Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014818.1 Corchorus capsularis cultivar CVL-1 contig14839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60840
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:1509 original size:33 final size:32
Alignment explanation
Indices: 1446--1550 Score: 111
Period size: 33 Copynumber: 3.2 Consensus size: 32
1436 ATTAGCATCC
* **
1446 AAAACAGATTTAGTTTTATCACAAACAACACAT
1 AAAACAGATTTAGTTTCATTGCAAACAACAC-T
*
1479 AAAACAGATTTAGTTTCATTGCAAAGAACACT
1 AAAACAGATTTAGTTTCATTGCAAACAACACT
** * *
1511 CAAATTAGGTTTAGTATCATTGCAAACAACATCT
1 -AAAACAGATTTAGTTTCATTGCAAACAACA-CT
1545 AAAACA
1 AAAACA
1551 CTCTTTGCAA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
32 1 0.02
33 56 0.95
34 2 0.03
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.28
Consensus pattern (32 bp):
AAAACAGATTTAGTTTCATTGCAAACAACACT
Found at i:21097 original size:54 final size:54
Alignment explanation
Indices: 21015--21117 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
21005 CGGCCACCAT
** *
21015 CGCATGGAGCAACCGGCCATGACTGGCCAAAGCAT-GGAGCATCGCATGGAACAA
1 CGCATGGAGCAACCGGCCACAACCGGCCAAAGCATGGGA-CATCGCATGGAACAA
* *
21069 CGCATGGGGCAACCGGCCACAACCGGCCAACGCATGGGACATCGCATGG
1 CGCATGGAGCAACCGGCCACAACCGGCCAAAGCATGGGACATCGCATGG
21118 GCCATCCGGC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 40 0.93
55 3 0.07
ACGTcount: A:0.28, C:0.31, G:0.31, T:0.10
Consensus pattern (54 bp):
CGCATGGAGCAACCGGCCACAACCGGCCAAAGCATGGGACATCGCATGGAACAA
Found at i:21103 original size:42 final size:42
Alignment explanation
Indices: 21057--21139 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
21047 CATGGAGCAT
*
21057 CGCATGGAACAACGCATGGGGCAACCGGCCACAACCGGCCAA
1 CGCATGGAACAACGCATGGGCCAACCGGCCACAACCGGCCAA
* * *
21099 CGCATGGGACATCGCATGGGCCATCCGGCCACAACCGGCCA
1 CGCATGGAACAACGCATGGGCCAACCGGCCACAACCGGCCA
21140 TTCGACCCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.27, C:0.37, G:0.29, T:0.07
Consensus pattern (42 bp):
CGCATGGAACAACGCATGGGCCAACCGGCCACAACCGGCCAA
Found at i:22064 original size:8 final size:8
Alignment explanation
Indices: 22051--22096 Score: 92
Period size: 8 Copynumber: 5.8 Consensus size: 8
22041 CACCACCTTC
22051 AATTCAAA
1 AATTCAAA
22059 AATTCAAA
1 AATTCAAA
22067 AATTCAAA
1 AATTCAAA
22075 AATTCAAA
1 AATTCAAA
22083 AATTCAAA
1 AATTCAAA
22091 AATTCA
1 AATTCA
22097 GAAACTTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (8 bp):
AATTCAAA
Found at i:24670 original size:30 final size:30
Alignment explanation
Indices: 24630--24688 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
24620 TGTCTTCAAG
24630 TCCATAATAAGTCCTT-GGCGCATCATTCCT
1 TCCATAATAAG-CCTTGGGCGCATCATTCCT
*
24660 TCCATGATAAGCCTTGGGCGCATCATTCC
1 TCCATAATAAGCCTTGGGCGCATCATTCC
24689 CTCCCCCTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.31
Consensus pattern (30 bp):
TCCATAATAAGCCTTGGGCGCATCATTCCT
Found at i:25105 original size:33 final size:33
Alignment explanation
Indices: 25068--25152 Score: 125
Period size: 33 Copynumber: 2.6 Consensus size: 33
25058 TCTTTTCATT
25068 CAAAACAGAATTATTTTCAATGCTATGATCAAC
1 CAAAACAGAATTATTTTCAATGCTATGATCAAC
* *
25101 CAAAACAAAATTATTTTTAATGCTATGATCAAC
1 CAAAACAGAATTATTTTCAATGCTATGATCAAC
* * *
25134 CAAAATAGATTTGTTTTCA
1 CAAAACAGAATTATTTTCA
25153 TCACAATTAG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.34
Consensus pattern (33 bp):
CAAAACAGAATTATTTTCAATGCTATGATCAAC
Found at i:31879 original size:12 final size:12
Alignment explanation
Indices: 31846--31885 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
31836 CATGACCGTC
31846 CAACGCATGGAG
1 CAACGCATGGAG
* *
31858 CATCGTATGGAG
1 CAACGCATGGAG
*
31870 CAACGCATGGGG
1 CAACGCATGGAG
31882 CAAC
1 CAAC
31886 CGGCCACAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.33, T:0.12
Consensus pattern (12 bp):
CAACGCATGGAG
Found at i:31916 original size:54 final size:54
Alignment explanation
Indices: 31819--31921 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
31809 CGGCCACCAT
** * *
31819 CGCATGGAGCAACCGGCCATGACCGTCCAACGCATGGAGCATCGTATGGAGCAA
1 CGCATGGAGCAACCGGCCACAACCGGCCAACGCATGGAGCATCGCATGGAGCAA
*
31873 CGCATGGGGCAACCGGCCACAACCGGCCAACGCATGG-GACATCGCATGG
1 CGCATGGAGCAACCGGCCACAACCGGCCAACGCATGGAG-CATCGCATGG
31922 GCCATCCGGC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.02
54 42 0.98
ACGTcount: A:0.26, C:0.32, G:0.31, T:0.11
Consensus pattern (54 bp):
CGCATGGAGCAACCGGCCACAACCGGCCAACGCATGGAGCATCGCATGGAGCAA
Found at i:32944 original size:30 final size:30
Alignment explanation
Indices: 32904--32962 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32894 TGTCTTCAAG
32904 TCCATAATAAGTCCTT-GGCGCATAATTCCT
1 TCCATAATAAG-CCTTGGGCGCATAATTCCT
*
32934 TCCATGATAAGCCTTGGGCGCATAATTCC
1 TCCATAATAAGCCTTGGGCGCATAATTCC
32963 CTCCCCCTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (30 bp):
TCCATAATAAGCCTTGGGCGCATAATTCCT
Found at i:33392 original size:33 final size:32
Alignment explanation
Indices: 33337--33424 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 32
33327 GCTATGATCA
* * *
33337 ACCAAAACAAATTT-GTTTTCATCA-CAATTAGC
1 ACCAAAACAGATTTAG-TATCATCACCAA-TAAC
*
33369 ATCCAAAACAGATTTAGTGTCATCACCAATAAC
1 A-CCAAAACAGATTTAGTATCATCACCAATAAC
33402 ACCTAAAACAGATTTAGTATCAT
1 ACC-AAAACAGATTTAGTATCAT
33425 TGCAAACAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
32 3 0.06
33 41 0.85
34 4 0.08
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (32 bp):
ACCAAAACAGATTTAGTATCATCACCAATAAC
Found at i:33436 original size:33 final size:33
Alignment explanation
Indices: 33373--33477 Score: 120
Period size: 33 Copynumber: 3.2 Consensus size: 33
33363 ATTAGCATCC
* ** * *
33373 AAAACAGATTTAGTGTCATCACCAATAACACCT
1 AAAACAGATTTAGTATCATTGCAAACAACACCT
*
33406 AAAACAGATTTAGTATCATTGCAAACAACACTT
1 AAAACAGATTTAGTATCATTGCAAACAACACCT
** * *
33439 AAATTAGGTTTAGTATCATTGCAAACAACATCT
1 AAAACAGATTTAGTATCATTGCAAACAACACCT
33472 AAAACA
1 AAAACA
33478 CTCTTTGCAA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.27
Consensus pattern (33 bp):
AAAACAGATTTAGTATCATTGCAAACAACACCT
Found at i:40588 original size:30 final size:30
Alignment explanation
Indices: 40548--40606 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
40538 TGTCTACAAG
40548 TCCATAATAAGTCATT-GGCGCATCATTCCT
1 TCCATAATAAG-CATTGGGCGCATCATTCCT
* * *
40578 TCCATGATAAGCCTTGGGTGCATCATTCC
1 TCCATAATAAGCATTGGGCGCATCATTCC
40607 CTCCCCTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (30 bp):
TCCATAATAAGCATTGGGCGCATCATTCCT
Found at i:41056 original size:33 final size:33
Alignment explanation
Indices: 41017--41103 Score: 115
Period size: 33 Copynumber: 2.6 Consensus size: 33
41007 CTATGATCAA
* *
41017 CTAAAACAGATTT-GTTTTCATCACAATTAGCATC
1 CTAAAACAGATTTAG-TTTCATCACAAATAACA-C
41051 C-AAAACAGATTTAGTTTCATCACAAATAACAC
1 CTAAAACAGATTTAGTTTCATCACAAATAACAC
*
41083 CTAAAACAGATTTAGTGTCAT
1 CTAAAACAGATTTAGTTTCAT
41104 TGCAAACAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
32 2 0.04
33 44 0.92
34 2 0.04
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (33 bp):
CTAAAACAGATTTAGTTTCATCACAAATAACAC
Found at i:41115 original size:33 final size:33
Alignment explanation
Indices: 41052--41156 Score: 111
Period size: 33 Copynumber: 3.2 Consensus size: 33
41042 ATTAGCATCC
* * *
41052 AAAACAGATTTAGTTTCATCACAAATAACACCT
1 AAAACAGATTTAGTATCATCGCAAACAACACCT
* * *
41085 AAAACAGATTTAGTGTCATTGCAAACAACACTT
1 AAAACAGATTTAGTATCATCGCAAACAACACCT
** ** *
41118 AAATTAGGCTTAGTATCATCGCAAACAACATCT
1 AAAACAGATTTAGTATCATCGCAAACAACACCT
41151 AAAACA
1 AAAACA
41157 CTCTTTGCAA
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.45, C:0.20, G:0.10, T:0.26
Consensus pattern (33 bp):
AAAACAGATTTAGTATCATCGCAAACAACACCT
Found at i:42550 original size:10 final size:9
Alignment explanation
Indices: 42535--42559 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
42525 TGGTAGATAG
42535 TTTTTTTTA
1 TTTTTTTTA
42544 TTTTTTTTA
1 TTTTTTTTA
42553 TTTTTTT
1 TTTTTTT
42560 GATAATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:46762 original size:3 final size:3
Alignment explanation
Indices: 46754--46797 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
46744 GCTAACCTGG
* * *
46754 AGA AGA AGA AGA AGA GGA ATA AGA AGA AGAA AGA AGA AAA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA AGA A
46798 ACCCTAATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:53099 original size:107 final size:106
Alignment explanation
Indices: 52945--53233 Score: 408
Period size: 107 Copynumber: 2.7 Consensus size: 106
52935 ATAAATTATG
* * *
52945 AAATTAA-AGATTT-TTATTATAGAGTTTTAGAAATAAAATATAAAACTAATTTCACTAAATTTA
1 AAATTAATA-ATTTATTATTATAGGGTTTTAGAAATAAAATATAAAACTAATTTCCCTAAGTTTA
*
53008 GCTCCAAATTAAAATTTTATTTTTACTTTAAGGGTAAATTTCA
65 GC-CCAAATTAAAATTTTATTTTTACTTTAAGGGTAAATTCCA
* * *
53051 AAATTAATAATTTATTATTATAGGGTTTTAAAAATAAAATACAGAACTAATTTCCCTAAGTTTAG
1 AAATTAATAATTTATTATTATAGGGTTTTAGAAATAAAATATAAAACTAATTTCCCTAAGTTTA-
* *
53116 GCCCAAATTAAAATTTTATTTTTATTTTAAGGGTATATTCCA
65 GCCCAAATTAAAATTTTATTTTTACTTTAAGGGTAAATTCCA
* * *
53158 TAATTAATAA--TATTCTTATAGGGTTTTAGAAATAAAATATATAACTAA-TTCCCTAAGTTTAG
1 AAATTAATAATTTATTATTATAGGGTTTTAGAAATAAAATATAAAACTAATTTCCCTAAGTTTAG
53220 CCCAAATTAAAATT
66 CCCAAATTAAAATT
53234 AAAATCTTAT
Statistics
Matches: 166, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
103 15 0.09
104 13 0.08
105 34 0.20
106 11 0.07
107 91 0.55
108 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (106 bp):
AAATTAATAATTTATTATTATAGGGTTTTAGAAATAAAATATAAAACTAATTTCCCTAAGTTTAG
CCCAAATTAAAATTTTATTTTTACTTTAAGGGTAAATTCCA
Found at i:53574 original size:32 final size:32
Alignment explanation
Indices: 53538--53640 Score: 120
Period size: 32 Copynumber: 3.2 Consensus size: 32
53528 ATTTAAGTCA
53538 GGTTCGGGTTATATTTGGGTAAGGTTGATTCG
1 GGTTCGGGTTATATTTGGGTAAGGTTGATTCG
* *
53570 GGTTCAGGTTAAATTTGGGTCAA-GTTGATTCG
1 GGTTCGGGTTATATTTGGGT-AAGGTTGATTCG
* * * *
53602 GGTTCGGGTCACT-TTTGGGTCAGATTAATTCG
1 GGTTCGGGTTA-TATTTGGGTAAGGTTGATTCG
53634 GGTTCGG
1 GGTTCGG
53641 ACCCAAATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
31 1 0.02
32 57 0.95
33 2 0.03
ACGTcount: A:0.17, C:0.11, G:0.35, T:0.38
Consensus pattern (32 bp):
GGTTCGGGTTATATTTGGGTAAGGTTGATTCG
Found at i:53578 original size:16 final size:16
Alignment explanation
Indices: 53559--53606 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
53549 TATTTGGGTA
53559 AGGTTGATTCGGGTTC
1 AGGTTGATTCGGGTTC
* *
53575 AGGTTAAATTTGGG-TC
1 AGGTT-GATTCGGGTTC
*
53591 AAGTTGATTCGGGTTC
1 AGGTTGATTCGGGTTC
53607 GGGTCACTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
15 6 0.24
16 13 0.52
17 6 0.24
ACGTcount: A:0.19, C:0.10, G:0.33, T:0.38
Consensus pattern (16 bp):
AGGTTGATTCGGGTTC
Found at i:53816 original size:20 final size:20
Alignment explanation
Indices: 53783--53821 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
53773 CATAGATGAA
*
53783 ATTTTCAGAAATTATTATTT
1 ATTTTCAGAAATTAATATTT
53803 ATTTTCA-AATATTAATATT
1 ATTTTCAGAA-ATTAATATT
53822 GAATTTAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTTTCAGAAATTAATATTT
Found at i:53875 original size:16 final size:17
Alignment explanation
Indices: 53853--53897 Score: 67
Period size: 16 Copynumber: 2.8 Consensus size: 17
53843 TGTGTTCGGG
53853 TTTTTTCGGGTTTCAGA
1 TTTTTTCGGGTTTCAGA
*
53870 -TTTTTCGGG-TTCTGA
1 TTTTTTCGGGTTTCAGA
53885 TTTTTTCGGGTTT
1 TTTTTTCGGGTTT
53898 GAGCTTTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 5 0.20
16 18 0.72
17 2 0.08
ACGTcount: A:0.07, C:0.11, G:0.24, T:0.58
Consensus pattern (17 bp):
TTTTTTCGGGTTTCAGA
Found at i:53905 original size:15 final size:15
Alignment explanation
Indices: 53854--53920 Score: 62
Period size: 16 Copynumber: 4.3 Consensus size: 15
53844 GTGTTCGGGT
*
53854 TTTTTCGGGTTTCAG
1 TTTTTCGGGTTTGAG
*
53869 ATTTTTCGGGTTCTGAT
1 -TTTTTCGGGTT-TGAG
53886 TTTTTCGGGTTTGAG
1 TTTTTCGGGTTTGAG
* * * *
53901 CTTTTCAGATTTGGG
1 TTTTTCGGGTTTGAG
53916 TTTTT
1 TTTTT
53921 TTGGGTTCGG
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
15 18 0.43
16 22 0.52
17 2 0.05
ACGTcount: A:0.09, C:0.10, G:0.25, T:0.55
Consensus pattern (15 bp):
TTTTTCGGGTTTGAG
Found at i:54000 original size:74 final size:75
Alignment explanation
Indices: 53916--54054 Score: 210
Period size: 75 Copynumber: 1.9 Consensus size: 75
53906 CAGATTTGGG
* * * *
53916 TTTTTTTGGGTTC-GGCTTCAGGCGGATTCAGGT-ATTTGACTTTTTTAGTCAATTGGGTTCAGA
1 TTTTTTTGGGTTCAAG-TTCAGGCGGATTCAGATAATTTGACTTTTTCAATCAATTGGGTTCAGA
53979 TCGGGTTCGGA
65 TCGGGTTCGGA
*
53990 TTTTTTTGGGTTCAAGTTCGGGCGGATTCAGATAATTTGACTTTTTCAATCAATTGGGTTCAGAT
1 TTTTTTTGGGTTCAAGTTCAGGCGGATTCAGATAATTTGACTTTTTCAATCAATTGGGTTCAGAT
54055 TTTTCGGACA
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
74 28 0.48
75 30 0.52
ACGTcount: A:0.18, C:0.13, G:0.27, T:0.42
Consensus pattern (75 bp):
TTTTTTTGGGTTCAAGTTCAGGCGGATTCAGATAATTTGACTTTTTCAATCAATTGGGTTCAGAT
CGGGTTCGGA
Found at i:55869 original size:12 final size:12
Alignment explanation
Indices: 55854--55879 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
55844 CCACTTCACC
55854 GGCCATCGCATG
1 GGCCATCGCATG
55866 GGCCATCGCATG
1 GGCCATCGCATG
55878 GG
1 GG
55880 GCAGCCGGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (12 bp):
GGCCATCGCATG
Found at i:55902 original size:30 final size:30
Alignment explanation
Indices: 55866--55930 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
55856 CCATCGCATG
55866 GGCCATCGCATGGGGCAGCCG-GCCACAACC
1 GGCCATCGCATGGGGCAGCCGCG-CACAACC
*
55896 GGCCATCGCATGGGGCATCCGCGCACAACC
1 GGCCATCGCATGGGGCAGCCGCGCACAACC
55926 GGCCA
1 GGCCA
55931 ATGGACCCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.20, C:0.40, G:0.32, T:0.08
Consensus pattern (30 bp):
GGCCATCGCATGGGGCAGCCGCGCACAACC
Done.