Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014819.1 Corchorus capsularis cultivar CVL-1 contig14840, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13857

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2159--2234
33
2.3
33
95
0
134
34
13
14
38
1.85
2163--2254
33
2.8
33
88
0
112
29
13
16
41
1.86
3761--3867
35
3.2
34
88
5
121
37
17
8
36
1.80
3773--3871
35
2.8
35
90
0
153
38
17
8
36
1.79
3814--3875
19
3.4
19
65
13
58
37
16
9
37
1.81
3870--3912
21
2.0
21
86
0
59
41
18
2
37
1.63
3904--4106
43
4.7
43
91
0
325
37
17
6
38
1.75
4086--4124
18
2.2
18
95
0
69
41
17
5
35
1.72
4043--4177
61
2.2
61
90
1
216
39
16
6
37
1.75
3990--4227
104
2.4
98
86
8
334
39
16
6
37
1.74
4104--4185
43
1.9
43
90
5
130
40
15
6
37
1.73
4137--4242
55
1.9
56
86
5
153
39
16
6
37
1.74
8054--8620
90
6.3
90
83
3
569
31
25
16
26
1.96
8054--8648
89
6.6
88
82
7
630
31
25
16
26
1.96
8081--8648
268
2.1
267
82
9
688
30
26
16
26
1.97
8644--8866
35
6.4
35
84
1
252
30
22
15
31
1.95
8908--9029
55
2.2
54
76
12
122
31
18
17
32
1.94
11749--11816
27
2.5
28
85
4
86
35
16
8
39
1.79
11749--11806
14
4.3
13
81
12
64
39
15
6
37
1.74

Tables:   1

The End!