genome.fa.s14821.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014821.1 Corchorus capsularis cultivar CVL-1 contig14842, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111912

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4143--4283	33	4.3	32	80	7	131	25	9	21	43	1.82
4273--4353	33	2.5	33	97	0	153	23	12	18	45	1.83
4273--4367	33	3.0	31	90	4	120	27	11	18	42	1.85
4721--4779	30	2.0	30	86	6	84	30	16	28	23	1.97
5913--5947	18	1.9	18	94	0	61	77	2	0	20	0.90
7353--7448	33	2.9	33	85	0	129	26	10	18	44	1.82
7466--7549	33	2.5	33	94	0	150	32	8	15	44	1.76
11205--11256	24	2.2	24	82	0	59	26	9	21	42	1.83
11276--11360	33	2.6	33	86	0	107	31	8	17	42	1.79
11298--11378	33	2.6	30	75	11	90	38	7	16	38	1.76
12359--13014	303	2.2	305	91	2	1061	38	18	19	23	1.93
12359--13014	151	4.3	152	89	3	1009	38	18	19	23	1.93
14262--14320	30	2.0	30	83	6	75	23	27	16	32	1.96
14630--14732	33	3.2	31	81	11	111	43	22	7	26	1.80
14655--14732	33	2.4	33	95	0	138	46	21	7	24	1.77
14726--14807	33	2.5	33	84	7	96	37	23	9	29	1.87
14761--14865	33	3.2	32	78	2	93	45	20	8	24	1.79
19885--19924	12	3.3	12	85	0	53	10	35	25	30	1.88
26365--26471	33	3.2	33	92	2	162	11	28	39	21	1.87
41446--41508	27	2.3	27	100	0	126	47	6	19	26	1.73
50228--50258	12	2.6	12	94	0	53	19	41	32	6	1.77
51167--51220	21	2.6	21	90	0	90	16	20	40	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57512--57555	23	1.9	23	90	0	70	40	6	20	31	1.79
57531--57751	34	6.3	35	79	15	251	37	4	23	33	1.77
57540--57742	57	3.9	53	81	13	237	37	4	23	33	1.75
57653--57702	23	2.2	23	96	0	91	44	4	22	30	1.71
57772--57959	39	4.9	38	77	5	202	29	16	19	34	1.94
57982--58126	38	3.7	39	89	4	222	26	18	18	36	1.94
57982--58126	78	1.9	78	91	0	236	26	18	18	36	1.94
59155--59207	16	3.5	15	80	15	65	0	16	3	79	0.88
59155--59208	13	3.8	14	80	14	58	0	18	3	77	0.91
59161--59264	8	12.6	8	76	15	70	6	13	1	77	1.04
59156--59263	24	4.8	23	80	12	109	6	13	1	77	1.04
59196--59263	16	4.2	16	92	5	111	10	11	0	77	0.98
59286--59354	27	2.6	27	97	0	129	33	21	11	33	1.90
59956--59990	13	2.7	13	100	0	70	45	5	8	40	1.58
59969--60033	34	1.9	34	96	3	123	36	16	9	36	1.81
61573--61684	33	3.4	32	86	2	134	11	24	40	24	1.88
62701--62740	12	3.3	12	89	0	62	10	32	27	30	1.89
68994--69037	23	2.0	23	90	4	72	22	9	4	63	1.42
73404--73438	18	1.9	18	100	0	70	5	34	20	40	1.76
74877--74962	30	2.9	30	85	3	120	18	34	16	30	1.93
75301--75405	33	3.2	33	91	0	156	43	16	9	30	1.79
75430--75539	33	3.3	33	82	5	123	44	21	9	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75400--75530	66	2.0	66	83	3	165	41	19	9	28	1.83
76959--76993	18	1.9	18	88	0	52	14	0	2	82	0.77
76959--76984	9	2.9	9	100	0	52	11	0	0	88	0.52
78541--78678	33	4.2	33	95	0	231	44	17	8	28	1.78
78541--78715	66	2.7	66	86	1	199	44	17	8	29	1.79
78673--78803	66	2.0	66	83	5	167	42	18	8	30	1.80
78708--78810	33	3.1	34	85	2	138	45	17	8	28	1.78
83798--83870	38	1.9	38	100	0	146	39	21	12	26	1.89
89933--90037	33	3.2	33	78	5	95	42	20	9	26	1.83
94077--94133	30	1.9	30	85	7	80	24	29	15	29	1.96
97327--97392	33	2.0	33	84	0	87	37	31	6	24	1.80
105919--105962	22	2.0	22	86	8	63	40	11	4	43	1.61
105977--106601	22	28.9	22	70	13	248	36	15	8	39	1.78
105977--106941	44	22.4	43	68	16	316	36	15	8	39	1.79
106700--106821	22	5.5	22	73	10	79	32	13	9	43	1.78
106844--106983	22	6.4	21	73	13	97	35	17	7	38	1.79
107557--107622	31	2.1	31	91	0	105	50	4	18	27	1.66

Tables:   1

The End!