genome.fa.s14826.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014826.1 Corchorus capsularis cultivar CVL-1 contig14847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137463

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17190--17265	28	2.7	28	87	0	116	42	27	13	17	1.86
18427--18636	77	2.7	77	90	0	312	35	25	18	20	1.95
24713--24770	2	28.5	2	83	16	75	46	1	3	48	1.29
26017--26042	13	2.0	13	100	0	52	46	7	23	23	1.78
26060--26084	5	5.0	5	100	0	50	80	0	0	20	0.72
28079--28104	2	13.0	2	100	0	52	50	0	0	50	1.00
32306--32437	37	3.6	37	80	1	158	28	18	37	15	1.92
32301--32437	74	1.9	73	89	1	211	27	18	36	17	1.93
32565--32744	91	2.0	91	92	0	297	40	19	18	22	1.92
33851--33889	18	2.1	19	85	4	53	10	12	33	43	1.77
34901--34933	17	1.9	17	100	0	66	48	24	0	27	1.51
38472--39045	35	16.6	35	76	13	396	33	20	8	38	1.82
38945--39029	39	2.2	39	77	10	93	31	22	7	38	1.81
39964--40001	16	2.4	16	91	8	60	76	0	23	0	0.79
40327--40359	13	2.4	14	90	5	50	21	12	33	33	1.90
41443--41487	8	5.4	8	86	5	54	24	2	0	73	0.95
41452--41485	3	11.7	3	87	6	52	29	2	0	67	1.05
41726--41762	18	2.1	18	94	0	65	54	5	8	32	1.53
42215--42330	36	3.2	36	77	7	121	39	24	18	18	1.92
42326--42376	21	2.4	21	96	3	93	39	9	33	17	1.83
42964--42999	16	2.2	16	90	0	54	44	22	25	8	1.80
44748--44787	21	1.9	21	85	10	55	45	7	5	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50419--50513	48	2.0	48	97	0	181	34	14	13	36	1.86
50419--50501	25	3.4	25	64	12	64	34	15	13	36	1.87
51004--51045	22	1.9	22	95	0	75	26	26	21	26	1.99
58551--58582	15	2.1	15	100	0	64	43	0	6	50	1.27
63509--63542	18	2.0	18	88	11	54	35	11	5	47	1.65
73900--74370	235	2.0	235	100	0	942	24	14	20	41	1.89
74375--74508	67	2.0	67	97	0	250	27	12	12	47	1.78
77224--77366	51	2.9	48	78	9	137	40	5	16	37	1.72
77270--77386	48	2.4	48	81	9	121	41	5	13	40	1.67
78637--78975	51	6.8	49	75	10	285	40	5	17	37	1.71
78683--78971	51	5.7	50	77	8	300	41	4	15	38	1.68
78631--78975	101	3.4	100	91	2	505	40	4	17	37	1.71
79694--79778	26	3.1	26	65	17	64	51	3	17	27	1.61
79649--79918	55	4.9	55	82	2	326	50	6	17	25	1.69
79649--79920	109	2.5	110	84	1	339	50	6	18	25	1.69
79887--79941	18	3.2	17	75	14	60	49	7	16	27	1.72
79913--79997	32	2.5	33	79	11	93	45	7	23	23	1.77
79995--80038	22	1.9	24	86	9	65	43	6	20	29	1.78
80196--80296	21	4.9	21	71	11	82	52	3	20	22	1.63
80279--80318	16	2.6	16	88	4	64	55	5	20	20	1.62
80306--80339	14	2.3	15	90	5	52	55	5	14	23	1.61
80482--80545	27	2.2	29	78	13	78	62	1	21	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88176--88212	19	2.0	18	89	5	56	29	21	8	40	1.82
89057--89095	12	3.2	12	85	0	51	33	25	30	10	1.89
91124--91156	15	2.1	16	88	5	50	75	9	0	15	1.03
91367--91672	153	2.0	152	96	0	558	37	16	12	33	1.86
91568--92654	363	3.0	361	96	0	1996	43	17	10	27	1.83
94426--94544	35	3.4	35	89	0	184	36	16	8	38	1.79
94498--94634	17	7.7	17	71	16	84	36	17	5	40	1.74
94499--94617	52	2.2	55	88	8	174	36	17	5	39	1.74
94570--94615	21	2.2	21	88	0	65	41	17	4	36	1.69
94518--94691	73	2.4	73	90	3	278	36	15	6	41	1.73
94643--94688	21	2.2	21	84	0	56	39	10	4	45	1.59
94612--95053	56	8.0	56	77	10	374	37	16	7	38	1.77
94651--94691	21	2.0	21	90	0	64	39	12	0	48	1.41
94672--94794	35	3.5	35	95	2	221	39	17	7	36	1.77
94428--94885	125	3.7	126	84	5	579	37	16	7	37	1.78
94776--94815	21	1.9	21	89	0	62	37	15	2	45	1.59
94797--94885	35	2.5	35	92	0	142	38	16	7	37	1.78
94707--94941	91	2.6	91	90	0	382	38	16	8	36	1.78
94867--94906	21	1.9	21	100	0	80	42	15	0	42	1.46
94591--94941	91	3.9	90	81	8	342	37	15	7	38	1.77
95000--95084	35	2.4	35	88	0	134	38	16	7	37	1.76
95016--95075	18	3.3	19	65	13	54	40	16	10	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98808--98859	23	2.3	23	86	0	77	48	19	9	23	1.78
98968--99059	27	3.4	28	83	1	89	43	26	14	16	1.85
98980--99059	27	3.0	27	84	0	97	45	26	12	16	1.83
117905--118128	41	5.4	41	90	3	333	43	12	20	23	1.86
118136--118258	37	3.1	37	86	11	165	48	9	16	25	1.76
127861--127894	1	34.0	1	100	0	68	100	0	0	0	0.00
131513--131557	13	3.5	13	90	3	74	22	13	8	55	1.65
131856--131934	39	2.1	38	90	4	124	31	12	7	48	1.69
131958--132034	36	2.1	36	81	9	86	29	10	3	55	1.51

Tables:   1

The End!