Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014827.1 Corchorus capsularis cultivar CVL-1 contig14848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19874

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3240--3341
33
3.1
33
75
8
127
28
27
13
30
1.94
3215--3318
32
3.2
32
76
8
129
28
25
16
28
1.97
3215--3341
65
2.0
65
100
0
254
28
25
15
29
1.96
4397--4441
13
3.5
13
87
3
65
20
13
8
57
1.62
9229--9418
37
5.2
37
86
5
244
45
8
18
27
1.78
9229--9418
73
2.6
74
86
2
260
45
8
18
27
1.78
9388--9777
71
5.4
71
91
2
602
42
8
23
25
1.81
9514--9628
31
3.4
31
68
23
88
42
6
26
24
1.79
9743--10128
37
10.1
37
74
14
252
44
10
19
25
1.82
9748--10124
75
5.0
75
73
13
236
44
10
19
25
1.82
10142--10423
76
3.7
76
96
0
512
43
11
20
24
1.84
10149--10468
41
8.3
38
72
17
243
44
11
20
24
1.84
10149--10516
152
2.4
151
84
8
412
44
10
19
25
1.82
10471--10569
36
2.8
35
81
9
103
50
11
11
27
1.71
10592--10989
37
10.9
37
89
3
581
39
8
30
22
1.83
10997--11189
37
5.3
37
91
1
275
39
9
22
28
1.85
11001--11224
110
2.0
111
83
5
285
41
9
21
27
1.84
15063--15087
2
12.5
2
100
0
50
52
0
0
48
1.00
19725--19793
32
2.2
32
83
0
84
26
24
18
30
1.98

Tables:   1

The End!