genome.fa.s14828.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014828.1 Corchorus capsularis cultivar CVL-1 contig14849, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43045

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126--201	32	2.4	32	82	8	93	26	30	21	22	1.99
637--709	28	2.6	28	78	2	76	12	39	17	30	1.87
736--791	6	9.5	6	78	3	60	7	25	0	67	1.15
851--887	14	2.6	14	95	0	65	18	32	5	43	1.73
2607--2750	27	5.3	27	93	0	243	18	43	16	20	1.88
3557--3591	17	2.1	17	88	0	52	20	14	20	45	1.85
5119--5181	32	2.0	32	87	0	90	34	25	23	15	1.95
5259--5326	24	2.8	24	82	4	75	16	32	26	25	1.96
8395--8666	28	10.0	26	73	16	185	20	18	3	57	1.54
8446--8668	31	8.0	30	73	14	99	20	18	2	58	1.51
8420--8665	55	4.4	56	77	15	203	20	18	3	57	1.55
8395--8666	54	5.0	53	77	16	236	20	18	3	57	1.54
8420--8666	56	4.5	53	79	14	225	20	18	3	57	1.54
8653--8862	36	6.1	36	77	11	192	20	22	3	53	1.60
8645--8791	71	2.1	70	82	5	170	21	21	4	52	1.63
8716--8800	22	4.0	22	67	14	61	22	23	2	51	1.59
8713--8897	57	3.1	56	74	15	149	21	23	3	51	1.62
8752--8803	15	3.5	15	72	15	54	19	25	1	53	1.55
8751--8869	28	4.2	29	76	6	109	21	22	3	52	1.61
8681--8862	100	1.8	100	90	2	294	20	23	3	53	1.60
8832--8873	20	2.1	20	95	0	75	23	21	2	52	1.59
8681--8884	100	2.0	100	86	5	288	21	23	3	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8861--8889	15	1.9	15	100	0	58	27	24	6	41	1.80
13032--13056	10	2.5	10	100	0	50	48	20	8	24	1.76
16772--17077	165	1.9	165	98	0	594	47	15	15	22	1.81
19887--19914	1	28.0	1	100	0	56	0	0	0	100	0.00
21552--21599	2	24.0	2	80	16	55	45	0	6	47	1.27
21552--21598	17	2.5	20	86	13	64	44	0	6	48	1.28
22244--22284	18	2.3	18	91	8	66	19	21	29	29	1.98
25149--25189	20	2.1	19	86	4	55	26	9	7	56	1.58
25300--25367	32	2.1	33	86	5	93	27	8	14	48	1.74
28945--29121	40	4.2	40	70	18	128	50	2	19	27	1.59
29028--29133	40	2.7	39	83	2	140	50	2	21	25	1.63
29138--29210	32	2.3	33	86	9	98	47	8	21	21	1.76
29327--29475	40	3.7	40	93	0	244	52	3	22	22	1.62
29448--29493	22	2.1	21	84	15	58	52	6	19	21	1.69
29480--29651	36	4.9	36	82	2	197	53	4	22	20	1.62
29481--29651	72	2.4	71	84	2	218	53	4	22	19	1.62
29614--29719	26	4.6	21	73	15	68	52	3	20	22	1.62
29643--29874	26	8.3	26	71	18	130	56	3	21	17	1.56
29847--29896	21	2.3	23	79	6	59	56	0	26	18	1.42
37033--37156	33	3.7	33	81	8	144	7	27	41	23	1.80
42358--42400	7	6.3	7	94	5	79	44	41	0	13	1.44
42359--42400	20	2.1	20	100	0	84	42	42	0	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42476--42509	10	3.6	9	88	11	50	14	0	0	85	0.60

Tables:   1

The End!