Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014829.1 Corchorus capsularis cultivar CVL-1 contig14850, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45160

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
447--559
33
3.4
32
79
7
120
7
27
40
23
1.82
1195--1219
13
1.9
13
100
0
50
76
8
16
0
1.02
1193--1310
51
2.3
52
75
7
143
55
7
13
23
1.64
4963--5035
33
2.2
33
85
0
101
45
21
6
26
1.77
10196--10878
47
15.0
47
74
13
455
17
26
19
36
1.94
10513--10777
136
1.9
139
82
9
333
18
25
20
35
1.95
10243--10873
183
3.5
179
77
11
576
17
26
19
36
1.94
10877--11208
49
6.8
49
83
5
377
21
26
16
35
1.94
10846--11317
49
9.6
48
79
8
373
19
25
17
37
1.93
10881--11157
97
2.8
96
85
4
349
21
26
17
34
1.95
10877--11309
50
8.8
50
80
6
366
19
26
17
36
1.93
12342--14218
940
2.0
939
92
1
3107
31
23
15
28
1.96
18057--18098
22
2.0
22
86
9
61
38
30
2
28
1.70
20938--20975
16
2.2
16
90
9
58
57
15
0
26
1.38
37765--38139
70
5.4
70
86
2
472
26
29
16
27
1.96
37765--38137
138
2.7
138
89
0
530
26
29
16
27
1.96
38464--38490
6
4.5
6
100
0
54
55
14
0
29
1.40
44657--44683
6
4.5
6
100
0
54
55
14
0
29
1.40

Tables:   1

The End!