Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001483.1 Corchorus capsularis cultivar CVL-1 contig01483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5821
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:4866 original size:2 final size:2

Alignment explanation


    Indices: 4859--4888  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       4849 ATTCAAAAGG

                                                        
       4859 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       4889 ACTATATGAT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.