Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014831.1 Corchorus capsularis cultivar CVL-1 contig14852, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55916

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1276--1418
49
2.9
50
90
3
218
23
13
32
30
1.93
13013--13090
25
3.1
24
66
20
61
25
15
28
30
1.96
13010--13150
50
2.8
50
89
5
214
22
12
33
31
1.92
20963--20994
16
1.9
17
93
6
57
18
9
9
62
1.52
23165--23431
134
2.0
128
84
11
346
32
15
17
34
1.92
31252--31314
30
2.1
30
88
5
92
19
31
17
31
1.95
36198--36637
39
12.1
38
80
11
414
44
11
18
25
1.84
36340--36637
109
2.8
104
81
10
288
44
10
18
26
1.82
36198--36746
36
15.2
34
81
10
390
44
11
18
25
1.83
39933--39982
13
3.8
13
77
17
50
46
0
46
8
1.32
42788--42841
4
13.5
4
92
0
90
48
24
0
27
1.52
43030--43058
2
15.0
2
92
7
51
48
0
0
51
1.00
45286--45428
68
2.0
72
86
7
206
46
16
13
23
1.82
49453--49482
12
2.4
12
94
5
51
40
0
3
56
1.16
50868--50900
17
2.0
17
88
5
50
15
6
0
78
0.93
51241--51278
2
20.5
2
84
15
55
44
0
0
55
0.99
51241--51290
19
2.4
22
81
18
63
46
2
0
52
1.12
52232--52256
2
12.5
2
100
0
50
48
0
0
52
1.00
54143--54210
32
2.2
32
86
2
93
22
29
25
23
1.99

Tables:   1

The End!