Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014838.1 Corchorus capsularis cultivar CVL-1 contig14859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38492

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10591--10731
33
4.3
32
79
7
122
26
9
21
42
1.83
10711--10784
33
2.2
33
90
0
121
33
10
17
37
1.85
10722--10793
33
2.2
33
89
0
108
26
11
20
41
1.86
16277--16331
7
8.0
7
74
11
51
41
3
14
40
1.63
16278--16335
14
4.2
14
72
12
57
43
5
13
37
1.67
17095--17182
44
2.0
44
88
6
115
42
10
15
31
1.81
17107--17220
44
2.7
43
84
7
146
44
7
15
31
1.75
20004--20055
14
3.7
14
84
7
61
44
7
13
34
1.72
20011--20061
26
2.0
25
85
14
68
41
5
17
35
1.74
20668--20748
7
11.0
7
80
11
83
80
0
17
2
0.82
20673--20748
15
4.9
15
85
11
91
80
0
17
2
0.83
20669--20748
22
3.5
22
81
14
83
81
0
16
2
0.80
20672--20748
8
9.8
8
81
16
63
80
0
16
2
0.82
21266--21304
19
2.0
19
85
5
51
43
7
15
33
1.75
21518--21544
9
3.0
9
100
0
54
11
11
22
55
1.66
21905--21932
14
2.0
14
100
0
56
21
14
14
50
1.78
22119--22157
20
2.0
20
100
0
78
33
10
15
41
1.81
22704--22741
19
2.0
19
100
0
76
36
5
26
31
1.79
23037--23063
12
2.2
12
100
0
54
33
37
0
29
1.58
24507--24849
50
6.9
50
80
6
286
42
5
17
34
1.73
24495--24849
99
3.6
98
77
6
331
42
6
17
34
1.74
25688--25996
55
5.6
55
95
0
528
49
6
17
26
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26309--26639
43
7.7
42
73
15
180
54
6
20
17
1.66
26259--26639
64
5.9
64
72
15
268
54
6
20
18
1.66
26294--26673
21
17.8
21
69
17
151
54
6
20
19
1.65
26370--26438
35
2.0
35
91
0
111
56
2
20
20
1.55
26518--26573
15
3.9
15
74
9
62
58
5
19
16
1.56
28691--29000
64
4.9
64
86
3
421
33
13
25
27
1.93
35421--35451
13
2.4
13
94
0
53
25
0
3
70
1.02
36773--36844
27
2.7
27
82
8
94
15
18
23
43
1.88

Tables:   1

The End!