Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014839.1 Corchorus capsularis cultivar CVL-1 contig14860, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21154

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5317--5349
8
4.1
8
92
0
57
48
9
0
42
1.35
5632--5669
10
3.8
10
92
0
67
89
0
10
0
0.49
5631--5669
17
2.3
17
87
12
62
89
0
10
0
0.48
5759--5809
12
4.1
12
76
18
59
41
5
19
33
1.76
5771--5898
45
2.8
45
92
4
206
39
7
18
34
1.80
6579--6637
5
11.8
5
86
13
86
81
0
18
0
0.69
7759--7866
36
3.0
36
75
2
110
18
14
26
39
1.90
7768--7862
35
2.7
36
76
3
102
17
15
25
41
1.89
7846--8181
71
4.7
71
91
1
514
20
17
21
40
1.92
8162--8269
36
3.0
36
79
2
128
17
13
27
40
1.88
8154--8258
36
3.0
35
81
2
138
13
16
27
42
1.85
8249--8529
70
4.0
70
88
0
400
22
20
21
36
1.95
8903--8976
27
2.7
28
81
6
98
16
17
22
43
1.88
10416--10465
23
2.2
23
92
0
82
32
12
12
44
1.78
13174--13203
16
1.9
16
93
6
53
36
3
13
46
1.60
16223--16263
16
2.5
17
84
8
57
17
4
2
75
1.08
17815--17885
29
2.7
26
77
14
74
50
8
5
35
1.56
20406--20449
23
1.9
23
86
9
63
40
20
0
38
1.53

Tables:   1

The End!