Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001484.1 Corchorus capsularis cultivar CVL-1 contig01484, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6307
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:2979 original size:12 final size:13

Alignment explanation


    Indices: 2954--2987  Score: 61
    Period size: 12  Copynumber: 2.7  Consensus size: 13

       2944 TATATTCTCT

                         
       2954 ATATATATATATA
          1 ATATATATATATA

                         
       2967 ATATATA-ATATA
          1 ATATATATATATA

                     
       2979 ATATATATA
          1 ATATATATA

       2988 ACCCCTCGAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  12   12  0.60
  13    8  0.40

ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44


Consensus pattern (13 bp):   
ATATATATATATA
Done.