Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014841.1 Corchorus capsularis cultivar CVL-1 contig14862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72917

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
613--866
121
2.1
121
87
0
364
33
19
14
31
1.93
7490--7514
11
2.3
11
100
0
50
68
16
0
16
1.22
8719--8756
11
3.5
11
89
10
51
39
0
2
57
1.12
9883--10915
438
2.4
436
81
5
1174
31
13
12
42
1.80
11243--11275
2
17.5
2
87
12
52
51
0
0
48
1.00
11334--11364
15
2.1
15
93
0
53
38
9
0
51
1.35
12743--12793
19
2.6
19
87
3
66
60
0
5
33
1.21
12770--12808
16
2.5
16
91
4
62
48
0
17
33
1.48
24611--24653
6
7.2
6
86
0
59
16
34
27
20
1.94
24611--24658
24
2.0
24
87
0
69
16
35
27
20
1.94
25384--25408
3
8.3
3
100
0
50
32
0
0
68
0.90
27431--27489
27
2.2
27
81
0
73
23
23
5
47
1.71
28054--28115
21
3.0
21
90
0
97
43
20
9
25
1.83
28174--28277
21
5.0
21
77
3
93
34
20
15
29
1.93
28174--28279
42
2.5
43
81
3
117
33
21
15
29
1.94
28335--28375
21
2.0
21
90
0
64
39
19
14
26
1.90
28237--28478
101
2.4
98
88
3
333
35
22
11
30
1.90
28436--28624
21
9.0
21
84
5
240
36
23
13
26
1.92
28435--28613
64
2.9
63
86
5
247
36
23
12
27
1.90
28436--28624
85
2.3
84
88
2
274
36
23
13
26
1.92
29327--29408
22
3.7
22
68
3
58
23
19
32
24
1.97
32469--32534
10
6.8
10
81
13
75
71
1
0
27
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32470--32533
9
6.4
10
78
12
60
73
1
0
25
0.92
32469--32534
19
3.4
19
87
2
87
71
1
0
27
0.95
32604--32670
29
2.2
30
84
5
82
43
11
19
25
1.85
32951--32983
13
2.5
13
100
0
66
15
15
18
51
1.77
34200--34285
33
2.6
33
92
0
145
44
18
6
30
1.76
37231--37272
18
2.3
18
84
8
50
11
33
14
40
1.82
40274--40300
10
2.7
10
100
0
54
74
14
0
11
1.08
45279--45464
48
3.9
48
87
4
268
21
31
15
31
1.94
45284--45513
96
2.4
96
89
4
331
23
30
16
30
1.96
45277--45565
48
6.0
48
77
8
246
22
29
15
31
1.95
47293--47352
30
2.0
30
83
3
77
48
13
20
18
1.81
47495--47567
16
4.6
16
81
6
85
50
28
13
6
1.67
47735--47794
31
1.9
32
89
3
95
41
25
8
25
1.83
48239--48271
12
2.8
12
86
4
50
48
9
12
30
1.71
48238--48288
23
2.2
23
79
6
59
52
9
11
25
1.68
54670--54744
30
2.5
30
97
0
141
29
0
16
54
1.42
54800--54884
42
2.0
42
93
0
143
18
23
11
45
1.82
60250--60285
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!