genome.fa.s14842.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014842.1 Corchorus capsularis cultivar CVL-1 contig14863, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113744

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5467--5503	17	2.2	17	90	0	56	29	13	35	21	1.92
7446--7519	22	3.3	22	65	10	60	24	45	22	6	1.76
10254--11225	486	2.0	486	97	0	1854	31	12	26	29	1.92
14182--14244	22	2.9	22	92	0	99	22	25	4	47	1.70
14225--14260	15	2.4	15	90	0	63	25	25	5	44	1.75
14300--14366	22	3.1	22	79	16	77	19	22	5	52	1.67
14346--14410	32	2.0	32	82	5	78	21	23	3	52	1.61
14428--14477	14	3.4	14	78	8	55	18	20	4	58	1.55
14449--14536	40	2.3	37	79	13	90	21	18	6	53	1.67
14782--14842	21	2.8	22	75	9	63	18	16	6	59	1.58
14856--14908	22	2.4	22	80	0	70	22	28	5	43	1.76
14893--14930	20	1.9	20	88	0	58	31	26	2	39	1.70
14930--15009	20	4.0	20	77	3	79	21	18	6	53	1.66
14928--15009	41	2.0	41	87	0	119	20	18	6	54	1.64
14928--14989	21	3.0	21	78	2	72	19	19	6	54	1.65
14968--15043	34	2.3	32	81	4	89	26	19	1	52	1.54
18458--18523	34	1.9	34	93	6	116	37	7	13	40	1.73
22509--22555	24	2.0	24	82	0	58	17	8	40	34	1.79
24553--24595	12	3.6	12	81	12	52	30	30	0	39	1.57
26720--26746	14	1.9	14	100	0	54	51	11	7	29	1.64
27246--27311	32	2.1	32	100	0	132	45	9	15	30	1.77
28557--28635	31	2.5	31	85	0	113	31	25	29	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28567--28653	31	2.8	31	85	3	95	33	25	27	13	1.94
28645--28703	31	1.9	31	86	6	84	30	23	28	16	1.97
33715--33746	11	2.9	11	90	0	55	37	0	18	43	1.51
33715--33774	22	2.9	22	76	19	65	41	3	18	36	1.67
33725--33762	19	2.1	18	90	5	58	44	2	21	31	1.66
35098--35128	6	5.3	6	96	3	55	35	0	12	51	1.40
42973--43098	63	2.0	65	92	3	211	30	8	24	35	1.86
49032--49067	6	6.0	6	100	0	72	50	16	33	0	1.46
52475--52619	33	4.5	33	82	5	170	19	28	33	18	1.96
52467--52654	64	2.9	66	81	7	222	18	31	31	18	1.95
52616--52678	33	1.9	33	83	0	81	17	38	28	15	1.91
52505--52654	66	2.3	66	84	6	173	18	30	32	18	1.95
52689--52718	13	2.3	13	94	0	51	50	0	0	50	1.00
54993--55037	21	2.1	21	91	0	72	35	4	20	40	1.72
59111--59221	39	2.8	40	80	2	136	43	27	10	18	1.83
63031--63115	35	2.4	34	81	9	100	27	30	14	28	1.95
63483--63830	72	4.8	72	86	3	470	21	28	17	32	1.96
64602--64638	19	1.9	19	88	0	56	35	29	13	21	1.92
75003--75052	26	1.9	26	83	0	64	52	10	20	18	1.73
77715--77817	39	2.6	39	83	7	138	44	26	10	18	1.82
79736--79807	31	2.3	31	90	6	119	19	9	23	47	1.79
89311--89349	14	2.8	14	92	0	60	33	17	17	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90164--90206	12	3.5	12	90	6	68	27	23	16	32	1.96
90539--90587	25	2.0	25	84	8	64	40	0	0	59	0.98
90506--90589	22	3.9	21	73	18	66	38	2	1	58	1.19
94020--94247	109	2.1	110	94	3	399	39	10	1	48	1.48
96151--96318	86	2.0	85	94	3	293	36	10	3	48	1.55
96892--96955	33	1.9	33	90	6	103	37	9	0	53	1.34
99319--99363	13	3.4	13	77	17	56	11	20	6	62	1.50
108272--108310	20	2.0	20	85	10	53	25	5	5	64	1.35
108482--108710	22	10.3	22	77	9	205	36	9	17	37	1.82
108483--109112	44	14.4	42	68	16	252	38	9	16	35	1.82
108479--108714	66	3.5	65	83	6	267	36	9	17	36	1.82
108719--109132	22	18.6	22	69	18	98	39	9	16	34	1.82
108573--108843	146	1.9	144	79	7	305	37	9	17	35	1.82
108986--109113	66	2.0	65	82	4	159	42	10	13	34	1.78
108967--109132	22	7.6	22	76	7	135	42	9	13	34	1.77
109275--109380	44	2.4	44	83	11	130	43	9	11	35	1.73
109257--109549	22	13.6	22	69	12	106	41	8	13	36	1.75
109447--109500	23	2.3	23	83	0	72	42	3	14	38	1.64
109514--109560	22	2.1	22	88	0	67	34	10	12	42	1.78
109591--109653	22	2.8	22	78	2	54	31	14	17	36	1.90
109599--109687	45	2.0	45	84	4	117	32	11	17	38	1.86
109601--109685	22	3.8	22	78	3	71	34	11	16	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110007--110040	2	17.0	2	100	0	68	50	0	0	50	1.00
112462--112494	13	2.5	13	95	0	57	39	21	24	15	1.91
113510--113552	12	3.5	12	87	6	59	37	13	20	27	1.91
113712--113740	10	2.7	11	89	10	51	10	0	0	89	0.48
113715--113740	10	2.6	10	100	0	52	7	0	0	92	0.39

Tables:   1

The End!