Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014849.1 Corchorus capsularis cultivar CVL-1 contig14870, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30878

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--250
70
3.2
76
89
7
341
50
0
12
36
1.46
433--458
12
2.2
12
100
0
52
42
0
7
50
1.31
10947--11135
66
2.9
64
88
5
256
20
28
14
37
1.92
11365--11464
45
2.2
45
82
3
121
20
35
10
35
1.86
13498--13522
6
4.2
6
100
0
50
52
16
0
32
1.44
14181--14210
3
9.7
3
92
7
51
66
0
0
33
0.92
15054--15623
282
2.0
285
95
1
1020
35
14
13
36
1.85
15557--15810
136
1.9
136
97
0
481
37
17
11
34
1.85
18109--18150
5
8.4
5
94
0
66
21
38
23
16
1.93
19792--19875
21
3.7
21
71
22
80
15
10
9
64
1.49
19768--19879
48
2.3
47
90
4
188
18
10
8
61
1.54
19813--19854
13
3.1
14
89
6
68
16
11
4
66
1.40
19768--19854
14
5.9
14
75
20
79
17
11
8
63
1.51
25468--25780
166
1.9
166
86
2
443
38
14
16
30
1.89
27245--27311
28
2.3
29
79
7
73
47
10
20
20
1.79
30638--30705
3
23.3
3
84
11
88
66
1
1
30
1.10

Tables:   1

The End!