Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014850.1 Corchorus capsularis cultivar CVL-1 contig14871, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3418
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36


Found at i:2449 original size:27 final size:27

Alignment explanation


    Indices: 2419--2475  Score: 98
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       2409 ATGATAATCA

                                        
       2419 AAAATTTAATTACAATT-ATATGATTTC
          1 AAAATTTAATTACAATTGA-ATGATTTC

                                       
       2446 AAAATTTAATTACAATTGAATGATTTC
          1 AAAATTTAATTACAATTGAATGATTTC

               
       2473 AAA
          1 AAA

       2476 TGTTTTAGAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  27   28  0.97
  28    1  0.03

ACGTcount: A:0.47, C:0.07, G:0.05, T:0.40


Consensus pattern (27 bp):   
AAAATTTAATTACAATTGAATGATTTC
Done.