Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014851.1 Corchorus capsularis cultivar CVL-1 contig14872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28198

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22--362
172
2.0
174
90
2
535
31
15
19
33
1.93
1337--1369
2
16.5
2
100
0
66
51
0
0
48
1.00
9417--9780
22
16.5
22
72
14
225
35
9
16
38
1.80
9468--9692
67
3.4
65
76
11
235
36
8
17
36
1.81
16700--16816
16
7.4
16
77
12
125
38
39
15
6
1.74
16700--16816
32
3.7
32
88
3
166
38
39
15
6
1.74
20304--20362
30
2.0
30
86
6
84
23
32
15
28
1.95
21203--21263
25
2.5
23
75
12
59
60
11
4
22
1.50
23364--23432
31
2.3
30
87
5
95
31
15
13
39
1.86
23387--23443
29
2.0
28
82
3
69
29
14
14
42
1.84
23857--24212
177
2.0
178
87
1
518
50
2
8
37
1.49
24639--24713
31
2.4
31
91
4
116
30
16
10
42
1.81
24846--24926
29
2.7
29
84
9
92
38
13
19
28
1.90
25878--25903
13
2.0
13
100
0
52
15
30
7
46
1.74
27633--27734
31
3.3
31
81
14
120
22
25
33
18
1.97
27646--27750
32
3.3
32
81
7
124
23
24
33
18
1.97
27810--27926
32
3.7
32
87
5
157
22
18
31
27
1.97
27521--28045
178
3.0
175
82
4
633
27
19
28
24
1.99
28099--28188
32
2.8
32
91
3
146
20
38
21
20
1.93

Tables:   1

The End!