genome.fa.s14853.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014853.1 Corchorus capsularis cultivar CVL-1 contig14874, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37784

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7551--7600	21	2.4	21	79	0	55	36	8	14	42	1.74
10600--10689	44	2.0	44	97	0	171	54	5	22	17	1.63
10615--10687	21	3.4	21	65	20	60	54	4	23	17	1.60
11395--11471	32	2.4	32	93	2	129	22	20	6	50	1.71
14127--14203	15	5.1	14	71	13	55	36	1	3	58	1.25
17634--17784	50	3.0	50	95	0	266	35	15	13	36	1.86
18324--18455	68	1.9	69	85	1	185	26	27	18	28	1.98
18823--18856	14	2.4	14	95	0	59	29	23	0	47	1.52
18823--18897	30	2.6	27	80	16	71	25	21	5	48	1.71
18829--18870	22	1.9	22	90	9	68	28	21	2	47	1.63
18842--19088	97	2.5	100	75	15	242	24	23	9	42	1.83
18934--19004	36	2.0	36	91	0	115	25	23	5	45	1.75
19031--19233	8	25.0	8	67	15	87	27	21	5	44	1.75
19033--19233	24	8.2	24	71	15	112	27	21	5	44	1.76
18975--19171	82	2.4	82	93	0	331	26	22	7	43	1.80
19165--19235	29	2.4	29	83	4	90	29	21	4	45	1.70
19185--19304	22	5.5	21	75	10	89	29	22	5	42	1.77
19206--19347	44	3.4	42	67	21	102	29	23	7	39	1.82
19207--19291	36	2.4	36	78	4	100	30	21	7	41	1.79
19149--19313	22	7.5	22	74	6	86	29	22	6	41	1.79
19324--19432	22	4.9	22	78	8	114	30	19	7	43	1.78
19404--19554	14	10.9	14	66	19	59	32	20	3	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19362--19534	28	5.9	29	78	14	96	32	19	5	42	1.73
19392--19547	22	7.2	22	70	21	98	32	20	3	43	1.70
19507--19558	14	3.7	14	89	0	77	30	25	1	42	1.66
19427--19615	79	2.4	80	84	4	249	30	20	5	44	1.73
19590--19851	58	4.5	58	87	4	332	25	22	11	40	1.87
19762--19792	16	1.9	16	93	0	53	29	19	3	48	1.64
19606--19851	117	2.1	119	88	1	361	24	22	11	40	1.88
19930--19993	14	4.4	15	72	14	55	29	26	3	40	1.71
19908--20081	44	4.1	43	76	16	177	31	22	7	37	1.82
19927--19993	22	3.0	22	84	0	98	29	25	4	40	1.75
19945--20022	36	2.2	36	84	9	97	32	25	5	37	1.78
19872--20042	80	2.1	81	86	6	240	30	24	5	39	1.79
19982--20081	22	4.5	22	76	8	105	33	21	8	38	1.82
20011--20122	14	7.9	14	71	18	63	32	17	7	42	1.77
19888--20066	80	2.2	79	85	7	238	31	23	7	37	1.82
19975--20123	22	7.3	20	70	20	80	32	19	6	41	1.77
20061--20127	34	1.9	36	87	6	102	29	19	5	44	1.74
22405--22434	7	4.3	7	95	0	51	63	13	0	23	1.29
25592--25616	13	1.9	13	100	0	50	24	40	0	36	1.55
29518--29554	19	2.0	18	89	5	56	29	21	8	40	1.82

Tables:   1

The End!