Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014856.1 Corchorus capsularis cultivar CVL-1 contig14877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65142

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5490--5527
16
2.3
17
90
4
60
23
55
21
0
1.44
6271--6337
6
11.2
6
70
17
50
29
46
19
4
1.69
8334--8359
2
13.0
2
100
0
52
50
0
0
50
1.00
14002--14077
36
2.1
36
90
0
116
28
11
34
25
1.91
14165--14414
102
2.5
99
87
4
333
24
13
33
28
1.93
17885--17949
2
32.5
2
90
0
67
40
1
9
49
1.44
21833--22050
108
2.0
108
97
0
409
38
16
25
19
1.92
27441--27478
19
2.0
19
85
10
51
39
5
13
42
1.66
30780--30897
50
2.4
50
97
0
227
21
23
22
32
1.98
33791--33842
21
2.5
21
96
0
95
13
34
26
25
1.93
34237--34402
31
5.5
31
69
16
141
31
21
20
26
1.98
34294--34382
29
3.0
30
70
17
94
30
21
21
26
1.98
34241--34401
60
2.7
61
93
1
263
32
20
20
26
1.97
34432--34599
31
5.5
31
69
16
120
26
20
20
32
1.97
34464--34564
29
3.4
29
70
15
98
26
20
19
32
1.97
34433--34595
60
2.7
60
95
1
283
25
20
20
33
1.97
38607--38670
32
2.0
32
90
0
101
32
14
31
21
1.93
40085--40584
249
2.0
249
94
0
867
28
23
22
25
1.99
64902--64943
18
2.4
18
92
4
68
66
0
14
19
1.25

Tables:   1

The End!