Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014858.1 Corchorus capsularis cultivar CVL-1 contig14879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51763

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--40
2
15.0
2
100
0
60
50
0
0
50
1.00
1444--1503
22
2.7
22
97
0
111
25
5
25
45
1.73
1619--1665
12
4.0
13
71
23
50
53
0
0
46
1.00
2911--2958
23
2.1
23
100
0
96
60
12
4
22
1.49
22650--22767
48
2.4
49
91
2
193
52
29
7
10
1.63
24305--24617
147
2.1
148
96
0
583
29
14
33
23
1.93
24305--24617
49
6.4
49
92
0
509
29
14
33
23
1.93
29143--29195
15
3.5
15
81
0
52
30
30
11
28
1.91
32411--32466
30
1.9
29
82
7
69
42
3
28
25
1.71
34903--34935
2
16.0
2
93
6
57
48
0
48
3
1.17
36379--36415
15
2.5
15
83
16
51
43
0
0
56
0.99
41052--41234
80
2.3
79
91
1
294
50
6
19
23
1.70
41053--41234
40
4.6
40
75
9
183
51
6
18
23
1.70
41407--41532
35
3.5
35
81
9
137
55
3
25
15
1.55
41486--41648
14
10.9
14
68
17
69
57
2
21
19
1.53
41550--41648
22
4.5
23
74
16
75
57
2
22
18
1.50
41568--41673
7
14.7
7
73
13
72
57
2
22
16
1.52
41561--41694
36
3.8
36
87
3
173
55
2
22
20
1.54
41486--41666
29
5.8
30
67
23
90
56
2
21
18
1.54
41557--41681
7
17.4
7
70
11
56
56
2
20
20
1.53
41656--41700
21
2.1
21
83
0
54
48
2
22
26
1.62
41685--41805
63
1.9
63
94
0
215
55
5
19
19
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41738--41952
26
8.1
26
81
5
241
55
4
19
20
1.61
41738--41952
54
4.0
52
81
4
241
55
4
19
20
1.61
41697--41831
63
2.1
63
78
12
150
55
4
20
19
1.60
41738--41950
80
2.7
80
94
0
363
54
4
19
21
1.61
41923--41985
32
1.9
33
90
9
103
63
3
15
17
1.44
41983--42045
30
2.1
30
84
3
81
69
1
15
12
1.26
41897--42045
60
2.5
59
78
15
148
64
2
16
16
1.41
41897--42026
28
4.5
28
69
23
74
64
2
17
15
1.39
41907--42083
58
3.0
57
74
19
143
63
2
18
16
1.42
50361--50399
18
2.0
20
85
9
55
23
15
33
28
1.95
51733--51763
1
31.0
1
100
0
62
0
0
0
100
0.00

Tables:   1

The End!