genome.fa.s14860.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014860.1 Corchorus capsularis cultivar CVL-1 contig14881, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51983

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--33	2	16.5	2	100	0	66	51	0	0	48	1.00
2672--2782	57	1.9	57	100	0	222	23	9	33	33	1.88
3547--3587	21	2.0	21	90	0	64	21	48	0	29	1.50
4391--4420	15	2.0	15	93	0	51	30	6	30	33	1.83
14097--14462	156	2.3	155	78	6	373	34	19	15	30	1.93
16167--16212	19	2.5	19	83	13	60	54	19	6	19	1.66
22634--22658	13	1.9	13	100	0	50	48	0	0	52	1.00
23242--23278	18	2.0	18	89	5	56	8	18	0	72	1.08
24160--24677	138	3.8	138	94	0	894	30	11	22	36	1.88
27053--27096	12	3.7	12	84	0	61	77	4	2	15	1.04
27055--27104	22	2.2	22	92	3	82	76	6	4	14	1.13
27066--27104	12	3.4	12	79	13	55	76	7	5	10	1.13
27516--27554	20	1.9	20	84	5	51	25	20	0	53	1.45
27707--27736	11	2.7	11	100	0	60	30	6	20	43	1.77
35681--35725	23	2.0	23	91	4	74	13	8	6	71	1.31
37036--37074	20	1.9	20	84	5	51	25	20	0	53	1.45
39626--39688	29	2.2	29	80	5	74	55	3	22	19	1.57
39620--40002	35	10.9	35	78	13	260	54	3	22	19	1.60
39746--39822	21	3.9	21	74	20	85	51	3	24	19	1.63
39894--40030	29	4.6	29	77	17	156	59	3	21	15	1.51
39904--40046	62	2.3	63	89	6	209	58	4	20	17	1.55
39966--40012	14	3.4	14	71	11	51	57	4	21	17	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40045--40103	29	2.0	30	86	3	84	64	1	13	20	1.37
40129--40280	29	5.4	27	73	15	121	56	3	21	18	1.55
40098--40229	60	2.3	55	83	10	160	59	4	21	14	1.52
40130--40280	27	5.4	27	72	18	112	56	3	21	18	1.56
40106--40294	57	3.3	54	82	8	173	56	4	22	17	1.58
42309--42379	36	1.9	38	86	11	103	42	7	4	46	1.50
45783--45834	21	2.5	22	84	9	81	17	34	26	21	1.95

Tables:   1

The End!