Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014869.1 Corchorus capsularis cultivar CVL-1 contig14890, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14839

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5445--5474
14
2.1
14
93
0
51
0
60
0
40
0.97
6420--6593
23
7.3
23
67
21
99
18
39
18
22
1.93
6434--6568
25
5.6
25
68
19
97
20
37
20
22
1.95
6418--6602
48
3.9
48
94
0
307
20
38
18
22
1.93
6687--6728
13
3.2
13
77
16
50
21
47
16
14
1.82
8698--8993
44
6.9
44
74
9
241
42
26
16
14
1.87
8698--8928
86
2.7
89
82
5
310
41
25
17
15
1.89
9319--9546
126
1.8
126
90
0
366
30
26
26
15
1.96
9888--10304
40
10.4
40
90
1
622
41
27
11
19
1.85
10270--10331
27
2.3
27
97
0
115
46
25
8
19
1.77
10337--11021
43
15.8
43
90
2
917
46
25
15
12
1.81
11933--12147
37
5.8
37
87
1
286
30
31
21
16
1.95
11943--12146
75
2.7
74
90
1
318
29
32
21
16
1.95
11943--12147
112
1.8
112
89
0
320
30
32
21
16
1.95
12789--13024
48
4.9
48
92
0
355
22
37
18
21
1.94
12831--13012
23
7.7
22
67
20
100
18
39
19
22
1.93
12814--12987
25
7.2
25
67
21
111
22
37
18
21
1.94
13106--13147
13
3.2
13
77
16
50
23
47
14
14
1.80
13106--13171
27
2.5
26
81
18
75
27
43
15
13
1.84
14581--14704
32
3.8
33
84
9
107
14
41
31
12
1.84
14628--14730
32
3.2
32
90
2
154
9
38
38
12
1.76

Tables:   1

The End!