genome.fa.s14870.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014870.1 Corchorus capsularis cultivar CVL-1 contig14891, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85372

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1751--1816	31	2.2	31	86	10	93	42	13	25	18	1.87
1733--1816	29	2.8	30	82	8	100	41	11	25	21	1.87
8049--8143	31	3.1	31	76	3	84	35	25	21	17	1.95
22348--22381	10	3.3	10	91	4	50	0	14	0	85	0.60
22348--22381	11	3.2	11	95	4	61	0	14	0	85	0.60
33608--33942	169	2.0	169	98	0	643	30	22	11	36	1.89
34142--34176	2	17.5	2	100	0	70	48	0	0	51	1.00
35656--35693	18	2.1	18	90	9	60	63	0	7	28	1.23
35656--35694	19	2.1	18	90	4	60	64	0	7	28	1.21
40690--40906	109	2.0	110	89	3	332	36	18	10	34	1.84
44612--44678	21	3.1	21	74	4	71	37	8	22	31	1.85
46452--46488	16	2.4	15	86	8	56	2	21	2	72	1.09
46452--46497	5	9.0	5	84	11	58	4	17	2	76	1.06
59512--59591	26	3.0	26	85	3	106	41	18	7	32	1.79
67904--68164	102	2.6	102	90	0	405	11	12	32	42	1.79
68115--68533	45	9.3	45	86	2	511	9	19	30	41	1.82
70323--70397	32	2.3	32	88	0	105	33	28	18	20	1.96
70474--70544	29	2.4	29	86	6	90	46	12	18	22	1.82
73773--74068	51	5.9	51	89	1	427	13	16	45	24	1.83
73911--74119	51	4.8	41	74	20	133	14	14	46	24	1.82
81912--82061	36	4.2	33	80	16	174	24	5	34	36	1.78
82058--82191	15	8.3	15	69	14	70	23	6	32	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82041--82306	66	3.9	66	81	5	228	23	6	34	35	1.81
81930--82387	18	26.4	18	75	8	330	23	5	36	34	1.78
82239--82376	33	4.1	33	78	9	125	23	2	41	31	1.69
82239--82389	51	3.0	50	82	7	171	23	2	41	32	1.69
84596--84633	11	3.5	11	89	10	51	39	0	2	57	1.12

Tables:   1

The End!