genome.fa.s14871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014871.1 Corchorus capsularis cultivar CVL-1 contig14892, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36565

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1387--1420	12	2.8	12	81	0	50	50	20	5	23	1.70
768--1981	331	3.7	317	76	9	1051	36	16	14	32	1.89
768--2199	659	2.2	648	80	6	1597	36	16	14	32	1.89
1900--2494	295	2.0	296	83	6	758	36	15	14	33	1.89
4230--5011	337	2.4	324	78	8	787	36	16	14	33	1.88
6081--6414	173	1.9	174	94	1	591	35	14	14	35	1.87
6766--10269	331	10.7	329	75	9	2739	35	16	14	32	1.89
6810--8647	976	1.9	978	84	3	2482	35	16	15	32	1.89
11073--11479	212	1.9	212	84	2	548	32	15	16	34	1.91
10754--11825	544	2.0	528	81	7	1230	35	16	14	33	1.90
11285--14666	332	10.2	330	77	9	2832	35	15	14	33	1.89
10438--12153	872	2.0	851	80	6	1904	35	16	14	33	1.89
12734--12761	2	14.0	2	100	0	56	50	0	0	50	1.00
14954--14997	22	2.0	22	86	8	63	40	11	4	43	1.61
15011--15533	22	23.6	22	71	9	221	35	15	10	39	1.81
15321--15405	23	3.7	23	84	1	100	37	14	7	41	1.73
15639--15763	22	5.7	22	72	16	80	33	13	9	43	1.77
15614--15784	44	3.9	44	75	6	141	35	12	9	42	1.75
15702--15784	22	3.8	21	75	9	78	38	13	9	38	1.77
15614--15780	88	1.9	88	80	7	196	34	13	9	43	1.76
15885--16009	22	5.7	22	72	7	65	36	19	8	36	1.81
15872--16014	22	6.5	22	72	13	64	34	20	6	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16043--16093	22	2.3	22	83	6	68	45	21	3	29	1.70
16079--16227	44	3.3	45	81	10	148	36	16	11	36	1.84
16101--16230	22	5.9	22	74	12	115	36	16	11	35	1.85
18620--18676	18	3.2	18	71	0	60	21	43	10	24	1.83
18623--18693	36	2.0	36	83	5	90	22	43	11	22	1.85
18680--18723	18	2.4	18	80	0	52	20	38	9	31	1.84
18655--18744	30	3.0	30	85	0	117	20	38	10	31	1.85
18841--18900	12	5.0	12	83	0	66	15	23	6	55	1.64
18814--18888	24	3.1	24	68	0	78	13	25	10	50	1.73
18844--18934	36	2.7	33	89	5	128	13	24	8	53	1.67
18826--18903	24	3.2	24	74	0	84	12	24	10	52	1.70
18840--18950	33	3.3	33	81	8	107	15	26	9	49	1.74
18929--19090	39	4.2	38	64	17	93	14	30	9	45	1.76
18911--19118	114	1.8	114	97	0	398	14	29	8	47	1.74
18844--19153	36	8.5	36	66	21	119	14	28	8	48	1.74
21789--22387	196	3.1	196	94	0	1058	33	9	15	41	1.80
30748--30792	23	2.0	23	100	0	90	33	13	31	22	1.92

Tables:   1

The End!