Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014872.1 Corchorus capsularis cultivar CVL-1 contig14893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58779

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--25
2
12.5
2
100
0
50
48
0
0
52
1.00
1650--1677
2
14.0
2
100
0
56
50
0
0
50
1.00
2470--2505
2
18.0
2
100
0
72
50
0
0
50
1.00
3636--3668
2
16.0
2
93
6
57
48
3
0
48
1.17
12106--12148
20
2.2
20
100
0
86
65
0
11
23
1.25
19140--19200
31
2.0
31
86
0
86
52
8
13
26
1.67
21963--21992
2
15.0
2
92
0
51
53
0
0
46
1.00
22271--22295
2
12.5
2
100
0
50
48
0
0
52
1.00
24160--24189
2
15.5
2
93
6
53
50
0
0
50
1.00
26999--27048
26
1.9
26
87
0
73
56
2
0
42
1.11
28075--28116
22
1.9
22
95
0
75
35
9
9
45
1.69
31136--31195
31
1.9
31
86
0
84
23
8
15
53
1.68
37506--37570
27
2.4
27
97
0
121
49
10
29
10
1.71
45408--45454
20
2.5
19
77
16
53
19
6
17
57
1.60
45660--45723
31
2.1
31
100
0
128
35
21
23
18
1.95
47661--47687
12
2.2
12
100
0
54
29
22
22
25
1.99
50507--50542
18
2.0
18
94
0
63
44
8
2
44
1.48
50658--50808
75
2.0
77
94
3
270
32
8
21
37
1.84
56361--56396
17
2.1
17
94
0
63
36
5
13
44
1.68
56592--56639
6
8.0
6
85
0
51
25
10
62
2
1.38
56589--56641
18
2.9
18
77
0
61
26
9
62
1
1.36
56584--56653
30
2.3
30
82
4
97
20
7
64
8
1.45

Tables:   1

The End!