Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014873.1 Corchorus capsularis cultivar CVL-1 contig14894, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16912

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3736--3774
8
4.9
8
87
0
60
5
12
43
38
1.65
3875--3934
19
3.1
20
80
7
61
48
5
1
45
1.34
3860--3934
14
4.7
17
73
21
65
49
4
1
45
1.29
3958--4019
31
2.0
30
93
3
106
24
16
8
51
1.71
3962--4027
31
2.1
31
91
0
105
24
18
6
51
1.68
4051--4090
20
2.0
20
85
4
55
30
5
0
65
1.14
4140--4224
22
3.9
22
93
0
143
34
14
16
35
1.89
4139--4244
44
2.3
46
87
3
162
34
13
16
35
1.87
4139--4256
44
2.6
44
81
10
150
33
11
17
37
1.87
4140--4256
22
5.2
23
83
10
127
32
11
17
37
1.87
4140--4278
22
6.2
22
82
9
106
31
10
18
38
1.85
4494--4699
22
9.4
22
73
14
129
42
9
12
35
1.76
4529--4567
21
2.0
19
85
14
53
46
5
7
41
1.55
4510--4699
44
4.3
43
76
9
161
42
9
12
36
1.75
4576--4679
42
2.4
43
82
7
122
42
10
12
34
1.77
4813--4879
19
3.5
19
91
2
107
43
11
20
23
1.85
4870--5122
22
11.7
22
68
13
114
40
8
13
37
1.75
4870--4994
44
2.9
43
81
4
135
39
9
13
37
1.78
4870--5162
22
13.5
22
70
12
99
39
8
13
37
1.76
5061--5163
23
4.6
22
80
3
107
38
6
12
41
1.70
5214--5299
45
1.9
45
81
9
104
33
12
15
38
1.85
10001--10042
3
13.7
3
95
5
75
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10491--10571
41
2.0
40
86
9
112
41
9
6
41
1.63
10803--10834
9
3.8
9
84
16
50
9
0
0
90
0.45
10804--10834
16
1.9
16
100
0
62
9
0
0
90
0.46
11598--11630
11
3.0
11
90
0
57
42
3
9
45
1.51
11765--11805
2
20.0
2
95
5
73
48
0
2
48
1.14

Tables:   1

The End!