Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014875.1 Corchorus capsularis cultivar CVL-1 contig14896, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78223

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5351--5380
2
15.5
2
93
6
53
50
0
0
50
1.00
6535--6573
20
2.0
20
89
0
60
20
43
7
28
1.79
8347--8415
33
2.1
33
88
0
102
18
33
37
10
1.85
9680--9706
6
4.5
6
100
0
54
18
14
0
66
1.25
11433--11462
15
2.0
15
93
0
51
13
50
6
30
1.67
12525--12555
15
2.1
15
87
0
53
12
77
3
6
1.08
20705--20744
3
13.3
3
100
0
80
67
0
0
32
0.91
28407--28436
15
1.9
16
93
6
53
43
0
3
53
1.17
32254--32850
301
2.0
301
88
1
901
33
14
15
36
1.87
38342--38379
11
3.5
11
85
10
51
57
2
0
39
1.12
39287--39326
20
2.0
20
100
0
80
35
15
15
35
1.88
39925--40263
114
3.0
114
91
0
561
33
17
13
35
1.89
46466--46527
30
2.1
30
84
0
79
45
0
46
8
1.32
49142--49168
1
27.0
1
100
0
54
100
0
0
0
0.00
56521--56612
46
2.0
46
100
0
184
26
21
15
36
1.93
67237--67270
16
2.1
16
88
0
50
0
17
0
82
0.67
67237--67270
13
2.8
12
91
8
59
0
17
0
82
0.67
67265--67300
14
2.6
14
86
0
54
25
11
5
58
1.54
71513--71569
19
2.7
21
81
15
73
10
10
8
70
1.35
71506--71567
19
2.9
20
86
13
72
9
9
8
72
1.28
77424--77455
7
4.6
7
96
0
55
62
0
37
0
0.95
77843--77886
2
20.5
2
90
9
61
47
6
0
45
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77922--77980
31
1.9
31
93
6
102
28
20
3
47
1.66

Tables:   1

The End!