Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014877.1 Corchorus capsularis cultivar CVL-1 contig14898, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76460

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
247--293
24
1.9
25
95
4
87
51
10
10
27
1.70
683--734
4
13.0
4
100
0
104
25
25
0
50
1.50
2765--2789
2
12.5
2
100
0
50
52
0
0
48
1.00
12827--12895
36
1.9
35
82
2
84
50
1
10
37
1.45
14293--14389
31
3.1
31
88
8
144
27
15
5
51
1.64
14682--14811
22
5.9
22
78
2
118
42
10
14
33
1.79
14893--15340
22
20.6
22
67
13
124
37
10
16
35
1.83
14893--15012
44
2.7
44
87
2
143
42
10
15
31
1.81
15123--15211
45
2.0
45
82
4
108
33
10
15
40
1.81
15310--15461
62
2.5
62
92
0
250
42
8
13
34
1.75
15522--15548
2
13.5
2
100
0
54
51
0
0
48
1.00
21806--21846
20
2.0
20
90
0
64
36
29
14
19
1.92
24243--24327
31
2.7
32
74
3
91
27
23
29
20
1.99
34847--34915
31
2.2
31
84
0
84
49
8
15
26
1.74
37254--37385
66
2.0
66
95
0
237
29
11
18
40
1.86
39973--40007
2
17.5
2
100
0
70
51
0
0
48
1.00
40673--40721
25
2.0
25
100
0
98
36
0
16
46
1.47
44015--44048
2
17.0
2
100
0
68
50
0
0
50
1.00
44568--44601
3
11.3
3
100
0
68
0
32
0
67
0.91
46579--46610
3
11.0
3
93
6
57
65
0
0
34
0.93
46684--46710
2
13.5
2
100
0
54
51
0
0
48
1.00
48165--48199
2
17.5
2
100
0
70
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51107--51190
37
2.3
37
88
8
120
57
2
8
32
1.41
60618--60712
28
3.1
28
63
25
66
47
10
12
29
1.75
60575--60773
64
3.0
64
91
4
301
43
11
14
30
1.80
66922--66950
3
10.0
3
92
7
51
65
0
34
0
0.93
70163--70209
23
2.0
23
100
0
94
25
21
0
53
1.46
71382--71686
107
2.9
107
87
5
401
40
8
8
42
1.65
72709--72755
22
2.1
22
96
0
85
42
4
6
46
1.48
72709--72751
11
3.9
11
90
0
68
41
4
6
46
1.51
74648--75063
207
2.0
207
98
0
805
25
16
14
42
1.87

Tables:   1

The End!