Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014881.1 Corchorus capsularis cultivar CVL-1 contig14902, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53430

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
492--588
31
3.1
31
87
0
131
21
12
18
47
1.81
5192--5218
14
1.9
14
100
0
54
25
7
7
59
1.51
11863--11902
12
3.4
12
82
6
55
12
22
5
60
1.52
11865--11918
23
2.4
23
84
9
67
7
20
7
64
1.43
12008--12167
73
2.2
73
81
3
178
34
8
16
40
1.78
12310--12367
19
2.9
20
82
7
73
41
24
10
24
1.86
13893--13961
34
2.0
34
88
0
102
13
15
26
44
1.83
15477--16164
219
3.1
220
87
3
974
18
23
18
39
1.92
16494--16566
30
2.4
30
76
2
74
32
16
17
32
1.93
18118--18143
12
2.2
12
100
0
52
53
15
15
15
1.73
21363--21398
16
2.2
17
90
5
56
19
13
11
55
1.68
27771--28212
147
3.0
146
89
3
616
14
32
10
42
1.81
28185--28227
16
2.7
16
89
7
61
4
27
6
60
1.43
31503--31602
50
2.0
50
94
0
173
22
12
15
51
1.75
37650--37739
45
2.0
45
95
0
162
43
16
6
33
1.74
41794--41866
31
2.3
32
76
2
76
36
6
20
35
1.80
42090--42124
2
17.5
2
100
0
70
51
0
0
48
1.00
46127--46753
22
29.0
22
67
12
223
35
15
10
39
1.81
46394--46495
23
4.5
23
83
1
100
38
13
8
39
1.76
46790--47188
22
18.0
22
67
14
113
33
16
10
40
1.82
46766--46931
88
1.9
88
81
7
203
33
13
10
43
1.77
46920--47019
21
4.5
22
72
15
82
32
14
11
43
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47042--47399
44
8.3
43
69
13
166
36
18
9
35
1.84
47217--47402
22
8.4
22
72
14
123
38
18
10
33
1.84
47566--47603
19
2.0
20
85
15
53
63
2
5
28
1.30
47744--47793
19
2.7
18
78
9
55
54
0
4
42
1.19
47796--47862
31
2.1
32
83
10
93
44
4
17
32
1.69
47803--47868
31
2.1
32
88
5
100
45
4
21
28
1.71
48472--48906
145
3.0
145
86
7
600
27
14
15
42
1.86
49670--49704
18
1.9
18
94
0
61
28
11
31
28
1.92
50851--51110
59
4.4
59
82
6
280
33
12
9
44
1.75
53337--53367
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!