Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014884.1 Corchorus capsularis cultivar CVL-1 contig14905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10127
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28


Found at i:2288 original size:16 final size:17

Alignment explanation


    Indices: 2267--2299  Score: 59
    Period size: 16  Copynumber: 2.0  Consensus size: 17

       2257 TATATGATAG

                             
       2267 CAAATTATGCAT-TGAT
          1 CAAATTATGCATATGAT

                             
       2283 CAAATTATGCATATGAT
          1 CAAATTATGCATATGAT

       2300 AGCGACACAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   12  0.75
  17    4  0.25

ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36


Consensus pattern (17 bp):   
CAAATTATGCATATGAT

Found at i:3212 original size:18 final size:18

Alignment explanation


    Indices: 3189--3227  Score: 78
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       3179 AGGCAAGTCA

                              
       3189 TGATAAAACCATTATTCT
          1 TGATAAAACCATTATTCT

                              
       3207 TGATAAAACCATTATTCT
          1 TGATAAAACCATTATTCT

               
       3225 TGA
          1 TGA

       3228 CAGGTAGAGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38


Consensus pattern (18 bp):   
TGATAAAACCATTATTCT
Done.