genome.fa.s14886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014886.1 Corchorus capsularis cultivar CVL-1 contig14907, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144012

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201--296	38	2.6	37	81	3	120	13	19	11	55	1.68
2463--2493	16	1.9	16	93	0	53	0	29	0	70	0.87
2464--2500	3	13.0	3	88	5	51	0	32	0	67	0.91
11895--12027	61	2.2	59	86	7	180	18	18	18	45	1.86
11895--11998	31	3.4	30	69	13	86	20	18	20	41	1.91
12619--12646	2	14.0	2	100	0	56	50	0	0	50	1.00
15695--15720	12	2.2	12	100	0	52	61	0	30	7	1.24
18891--18935	20	2.2	20	88	7	65	60	6	2	31	1.35
21651--21684	17	2.0	17	100	0	68	52	11	17	17	1.73
24002--24037	1	36.0	1	100	0	72	0	0	0	100	0.00
38831--38857	7	3.9	7	100	0	54	40	0	29	29	1.57
40773--40798	5	5.2	5	100	0	52	0	19	0	80	0.71
48630--48841	109	2.0	108	94	2	372	33	9	12	44	1.75
50323--50349	4	6.8	4	100	0	54	77	0	22	0	0.76
52932--53055	63	2.0	63	91	0	203	25	32	20	21	1.98
54053--54088	18	2.0	18	94	0	63	30	11	13	44	1.79
73575--73631	19	2.8	21	80	15	66	3	17	3	75	1.09
74851--74875	12	2.1	12	100	0	50	44	0	32	24	1.54
76375--76437	31	2.0	31	100	0	126	38	25	14	22	1.92
79959--80031	24	3.1	24	96	2	130	27	23	13	35	1.92
80001--80063	32	2.0	32	83	0	81	23	15	20	39	1.91
80083--80260	96	1.9	95	93	1	311	24	26	3	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80342--80398	30	1.9	30	100	0	114	24	19	3	52	1.61
83081--83124	23	1.9	23	95	0	79	13	34	20	31	1.92
83784--83864	25	2.8	32	73	25	104	28	13	22	35	1.92
83869--83914	24	1.9	24	86	0	65	34	13	13	39	1.83
83930--84110	95	1.9	95	91	2	301	26	24	4	44	1.74
84197--84254	30	1.9	30	100	0	116	25	18	3	51	1.62
86775--86804	15	2.0	15	100	0	60	20	0	6	73	1.05
104136--104282	73	2.0	73	98	0	285	28	12	20	38	1.90
107929--107955	12	2.2	12	100	0	54	0	14	14	70	1.17
135848--135876	3	9.7	3	100	0	58	31	0	0	68	0.89
137215--137240	6	4.3	6	100	0	52	30	19	15	34	1.93
139724--139837	60	1.9	60	82	10	144	35	20	17	26	1.94

Tables:   1

The End!