Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014887.1 Corchorus capsularis cultivar CVL-1 contig14908, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44222

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40--118
30
2.7
28
77
16
88
40
30
12
16
1.86
2246--2293
22
2.3
20
86
10
62
39
25
16
18
1.91
2213--2315
53
1.9
53
90
0
161
35
27
20
16
1.94
4025--4053
3
9.7
3
100
0
58
34
0
0
65
0.93
18624--18653
2
15.0
2
100
0
60
50
0
0
50
1.00
18925--18985
29
2.1
30
84
3
79
24
24
14
36
1.93
19099--19169
29
2.4
30
85
2
90
21
22
11
45
1.83
19490--19560
29
2.4
30
85
2
90
42
14
22
21
1.88
19908--20097
32
5.9
32
88
4
258
15
42
29
12
1.84
19908--20097
65
3.0
65
90
3
287
15
42
29
12
1.84
19917--20097
97
1.9
96
88
3
274
16
41
28
13
1.85
20172--20259
33
2.6
33
81
15
101
13
35
39
11
1.81
22381--22487
51
2.1
51
91
1
171
31
10
14
42
1.80
23484--23516
16
2.1
16
94
0
57
6
9
6
78
1.08
28822--28866
21
2.1
22
83
4
56
17
35
8
37
1.81
29172--29241
33
2.1
33
81
5
79
20
31
38
10
1.85
37117--37172
29
2.0
27
83
10
69
16
12
12
58
1.62
37903--37945
14
3.1
14
73
6
52
11
25
6
55
1.60
38810--38861
26
2.0
25
92
3
86
17
11
25
46
1.81
42775--42839
33
2.0
33
100
0
130
38
15
18
27
1.91

Tables:   1

The End!