Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014888.1 Corchorus capsularis cultivar CVL-1 contig14909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 148822
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:5306 original size:22 final size:22
Alignment explanation
Indices: 5203--5590 Score: 147
Period size: 22 Copynumber: 17.8 Consensus size: 22
5193 CTCCAACGTA
* * *
5203 AAATTATTGATAATCAAACTGTG
1 AAATT-TTGATAACCACACTATG
* ** *
5226 AAAATTTGATAACCTTATTAT-
1 AAATTTTGATAACCACACTATG
* * *
5247 AGAATTTCGATAACCTCTCTATG
1 A-AATTTTGATAACCACACTATG
* *
5270 AAAATTTGATAACCACACTGTG
1 AAATTTTGATAACCACACTATG
5292 AAATTTTGAT-A--AC-C-ATG
1 AAATTTTGATAACCACACTATG
** * **
5309 ATCTTTTGAT-GCCACA--AAA
1 AAATTTTGATAACCACACTATG
* *
5328 AAATTTTTGATAACCTTC-CTTTG
1 AAA-TTTTGATAACC-ACACTATG
* * *
5351 AAATTTTAATAACCTAATCCCTCT-
1 AAATTTTGATAACC--A-CACTATG
*
5375 AAATTTTGATAACCACTCTATG
1 AAATTTTGATAACCACACTATG
* *
5397 AAATTTTGGTAACCACTCTATG
1 AAATTTTGATAACCACACTATG
* * *
5419 AAATTTTGGTAACCACTCTATA
1 AAATTTTGATAACCACACTATG
* *
5441 AAATTTTGGTAACCGCACTATG
1 AAATTTTGATAACCACACTATG
* * * *
5463 AAATTTTGGTAACCATAGTACG
1 AAATTTTGATAACCACACTATG
* * *
5485 AATTTTTGATAACCTCCCTAT-
1 AAATTTTGATAACCACACTATG
* * * ***
5506 AAAATTTGGTTACTGGACTATG
1 AAATTTTGATAACCACACTATG
***
5528 AAATTTTGATAATGTC-CTTATG
1 AAATTTTGATAACCACAC-TATG
* *
5550 AAATTTTTGATAATCTC-CTTATG
1 AAA-TTTTGATAACCACAC-TATG
*
5573 AAATTTTGATTACCACAC
1 AAATTTTGATAACCACAC
5591 AAAGACAACA
Statistics
Matches: 275, Mismatches: 72, Indels: 36
0.72 0.19 0.09
Matches are distributed among these distances:
17 10 0.04
18 1 0.00
19 6 0.02
20 7 0.03
21 22 0.08
22 182 0.66
23 30 0.11
24 14 0.05
25 3 0.01
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (22 bp):
AAATTTTGATAACCACACTATG
Found at i:5434 original size:44 final size:44
Alignment explanation
Indices: 5375--5477 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
5365 TAATCCCTCT
* * *
5375 AAATTTTGATAACCACTCTATGAAATTTTGGTAACCACTCTATG
1 AAATTTTGGTAACCACTCTATAAAATTTTGGTAACCACACTATG
*
5419 AAATTTTGGTAACCACTCTATAAAATTTTGGTAACCGCACTATG
1 AAATTTTGGTAACCACTCTATAAAATTTTGGTAACCACACTATG
5463 AAATTTTGGTAACCA
1 AAATTTTGGTAACCA
5478 TAGTACGAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (44 bp):
AAATTTTGGTAACCACTCTATAAAATTTTGGTAACCACACTATG
Found at i:5468 original size:66 final size:66
Alignment explanation
Indices: 5375--5535 Score: 191
Period size: 66 Copynumber: 2.5 Consensus size: 66
5365 TAATCCCTCT
* * * * * *
5375 AAATTTTGATAACCACTCTATGAAATTTTGGTAACCACT-CTATGAAATTTTGGTAACCACTCTA
1 AAATTTTGGTAACCGCACTATGAAATTTTGGTAACCA-TACTACGAAATTTTGATAACCACCCTA
5439 TA
65 TA
* * *
5441 AAATTTTGGTAACCGCACTATGAAATTTTGGTAACCATAGTACGAATTTTTGATAACCTCCCTAT
1 AAATTTTGGTAACCGCACTATGAAATTTTGGTAACCATACTACGAAATTTTGATAACCACCCTAT
5506 A
66 A
* * *
5507 AAA-TTTGGTTACTGGACTATGAAATTTTG
1 AAATTTTGGTAACCGCACTATGAAATTTTG
5536 ATAATGTCCT
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
65 24 0.29
66 58 0.71
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.37
Consensus pattern (66 bp):
AAATTTTGGTAACCGCACTATGAAATTTTGGTAACCATACTACGAAATTTTGATAACCACCCTAT
A
Found at i:5561 original size:23 final size:23
Alignment explanation
Indices: 5524--5579 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
5514 GTTACTGGAC
*
5524 TATGAAA-TTTTGATAATGTCCT
1 TATGAAATTTTTGATAATCTCCT
5546 TATGAAATTTTTGATAATCTCCT
1 TATGAAATTTTTGATAATCTCCT
5569 TATGAAATTTT
1 TATGAAATTTT
5580 GATTACCACA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 7 0.22
23 25 0.78
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (23 bp):
TATGAAATTTTTGATAATCTCCT
Found at i:5710 original size:22 final size:22
Alignment explanation
Indices: 5678--5740 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 22
5668 AACCTAATCC
* *
5678 CTAT-AAATTTTGATAACCACT
1 CTATGAAATTTTGGTAACCACA
*
5699 CTATGAAATTTTGGTAACCGCA
1 CTATGAAATTTTGGTAACCACA
5721 CTATGAAATTTTGGTAACCA
1 CTATGAAATTTTGGTAACCA
5741 TAGTACGAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 4 0.11
22 33 0.89
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (22 bp):
CTATGAAATTTTGGTAACCACA
Found at i:5710 original size:263 final size:264
Alignment explanation
Indices: 5414--5893 Score: 890
Period size: 263 Copynumber: 1.8 Consensus size: 264
5404 GGTAACCACT
*
5414 CTATGAAATTTTGGTAACCACTCTATAAAATTTTGGTAACCGCACTATGAAATTTTGGTAACCAT
1 CTATGAAATTTTGATAACCACTCTATAAAATTTTGGTAACCGCACTATGAAATTTTGGTAACCAT
* * *
5479 AGTACGAATTTTTGATAACCTCCCTATAAAATTTGGTTACTGGACTATGAAATTTTGATAATGTC
66 AGTACGAATATTTAATAACCTCCCTATAAAATTTGGTTACCGGACTATGAAATTTTGATAATGTC
* *
5544 CTTATGAAATTTTTGATAATCTCCTTATGAAATTTTGATTACCACACAAAGACAACAAAACAAAA
131 CTTATGAAATTTTTGATAACCTCCTTATGAAAGTTTGATTACCACACAAAGACAACAAAACAAAA
5609 TCATAGGATCATTTACTCGCCAAAATATTTTTTTGATAACCTTCCTTTGAAATTTTAATAACCTA
196 TCATAGGATCATTTACTCGCCAAAATATTTTTTTGATAACCTTCCTTTGAAATTTTAATAACCTA
5674 ATCC
261 ATCC
*
5678 CTAT-AAATTTTGATAACCACTCTATGAAATTTTGGTAACCGCACTATGAAATTTTGGTAACCAT
1 CTATGAAATTTTGATAACCACTCTATAAAATTTTGGTAACCGCACTATGAAATTTTGGTAACCAT
5742 AGTACGAATATTTAATAACCTCCCTATAAAATTTGGTTACCGGACTATGAAATTTTGATAATGTC
66 AGTACGAATATTTAATAACCTCCCTATAAAATTTGGTTACCGGACTATGAAATTTTGATAATGTC
5807 CTTATGAAATTTTTGATAACCTCCTTATGAAAGTTTGATTACCACACAAAGACAACAAAACAAAA
131 CTTATGAAATTTTTGATAACCTCCTTATGAAAGTTTGATTACCACACAAAGACAACAAAACAAAA
5872 TCATAGGATCATTTACTCGCCA
196 TCATAGGATCATTTACTCGCCA
5894 TTATAGCTCA
Statistics
Matches: 209, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
263 205 0.98
264 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.35
Consensus pattern (264 bp):
CTATGAAATTTTGATAACCACTCTATAAAATTTTGGTAACCGCACTATGAAATTTTGGTAACCAT
AGTACGAATATTTAATAACCTCCCTATAAAATTTGGTTACCGGACTATGAAATTTTGATAATGTC
CTTATGAAATTTTTGATAACCTCCTTATGAAAGTTTGATTACCACACAAAGACAACAAAACAAAA
TCATAGGATCATTTACTCGCCAAAATATTTTTTTGATAACCTTCCTTTGAAATTTTAATAACCTA
ATCC
Found at i:5824 original size:23 final size:22
Alignment explanation
Indices: 5787--5845 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 22
5777 GTTACCGGAC
**
5787 TATGAAATTTTGATAATGTCCT
1 TATGAAATTTTGATAACCTCCT
5809 TATGAAATTTTTGATAACCTCCT
1 TATGAAA-TTTTGATAACCTCCT
*
5832 TATGAAAGTTTGAT
1 TATGAAATTTTGAT
5846 TACCACACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 13 0.39
23 20 0.61
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTCCT
Found at i:6679 original size:22 final size:21
Alignment explanation
Indices: 6669--6747 Score: 95
Period size: 22 Copynumber: 3.7 Consensus size: 21
6659 TTTATAGGAA
*
6669 AGTTATCAAAATTTCATAGTG
1 AGTTATCAAAATTTCATAGCG
* *
6690 TGGTTATCAAAATTTCATAGGG
1 -AGTTATCAAAATTTCATAGCG
*
6712 AGTTTATCAAAATTCCATAGCG
1 AG-TTATCAAAATTTCATAGCG
*
6734 ATTTATCAAAATTT
1 AGTTATCAAAATTT
6748 TATAAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
21 12 0.24
22 37 0.76
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (21 bp):
AGTTATCAAAATTTCATAGCG
Found at i:6710 original size:44 final size:44
Alignment explanation
Indices: 6549--7656 Score: 142
Period size: 44 Copynumber: 24.9 Consensus size: 44
6539 ATATAAAAAT
* *
6549 ATAGTGTGATTATCAAAATTTCTTAGG-AAGATTATCAAAATTTC
1 ATAGTGTGGTTATCAAAATTTCATAGGAAAG-TTATCAAAATTTC
* * * * * ** * *
6593 ACACTGAGGTAATCAAAATTTCACAGTG-TGGTTCTTAAAATTTC
1 ATAGTGTGGTTATCAAAATTTCATAG-GAAAGTTATCAAAATTTC
* * * *
6637 AT-CTGGATTATGTTATTAAAATTTTATAGGAAAGTTATCAAAATTTC
1 ATAGT-G--T-GGTTATCAAAATTTCATAGGAAAGTTATCAAAATTTC
* *
6684 ATAGTGTGGTTATCAAAATTTCATAGG-GAGTTTATCAAAATTCC
1 ATAGTGTGGTTATCAAAATTTCATAGGAAAG-TTATCAAAATTTC
* * * *
6728 ATAGCGAT--TTATCAAAATTTTATAAGG--AGGT-T-AAGATTTC
1 ATAGTG-TGGTTATCAAAATTTCAT-AGGAAAGTTATCAAAATTTC
* * * * *
6768 ATAATGTGGTTACCAAAATTTCATAGTAATGTTAGAAAAATCTAAATTTC
1 ATAGTGTGGTTATCAAAATTTCATAGGAAAGTT------ATCAAAATTTC
** * * * * *
6818 ATAAG-AAGATTATTAAAATTT-TTAGTATAGTTATCAAAATTTC
1 AT-AGTGTGGTTATCAAAATTTCATAGGAAAGTTATCAAAATTTC
** ** * * * *
6861 ATCAG-GAAGCAATCAAAATCTCATAGAGTAA-TTGGTCAAAAATTC
1 AT-AGTGTGGTTATCAAAATTTCATAG-GAAAGTT-ATCAAAATTTC
* * * * ** *
6906 ATAGAGATCAGATTACCAAAATTTCATAAGATTGTTATCAAAATTTT
1 ATAGTG-T--GGTTATCAAAATTTCATAGGAAAGTTATCAAAATTTC
* ** * * * *
6953 AAAACGAGGTTATCAAAATTTCCTAGTG-AGGTTATGAAAAAGTTTC
1 ATAGTGTGGTTATCAAAATTTCATAG-GAAAGTTAT-CAAAA-TTTC
* * * * *
6999 GTATTGTTGTTATTAAAATTTCATATGG-AGGTT-TC-AAATTTC
1 ATAGTGTGGTTATCAAAATTTCATA-GGAAAGTTATCAAAATTTC
* * * * * *
7041 ATAGTATGATTATCAAAA-TTCATA-TAGAGGTTAGCATAATTTC
1 ATAGTGTGGTTATCAAAATTTCATAGGA-AAGTTATCAAAATTTC
* * ** * **
7084 ATTG-GAAGGTTATTGAAATTTCATAAGG-AGGTTATTGAAATTTC
1 ATAGTG-TGGTTATCAAAATTTCAT-AGGAAAGTTATCAAAATTTC
* * *** * *
7128 ATAAG-GAGGATATCAAAATTTCATAGTTTAGTTTTCAAAATTTT
1 AT-AGTGTGGTTATCAAAATTTCATAGGAAAGTTATCAAAATTTC
* * * *
7172 ATAG-G-GGTTATCAAAATTTCATTGGGAGGTTAAC-AAATTTC
1 ATAGTGTGGTTATCAAAATTTCATAGGAAAGTTATCAAAATTTC
* ** * * *
7213 ATAATGAAGTTAATTATCGAAAA-ATCATAGGGATGTTATCAAAA--T-
1 AT-A-G-TG-TGGTTATC-AAAATTTCATAGGAAAGTTATCAAAATTTC
* * * *
7258 -T--TGTGATTATCAAAATTTCATAAGG-AGGTTATTAAAATTTT
1 ATAGTGTGGTTATCAAAATTTCAT-AGGAAAGTTATCAAAATTTC
* * * * *
7299 ATAGGGAGGTTTATCAAAATTTTATATGAATGTTCATCAAAATTTC
1 ATAGTGTGG-TTATCAAAATTTCATAGGAAAGTT-ATCAAAATTTC
** * * **
7345 ATACCG-GGATCAT-AACAATTTCGTAGTGTGA-TTATCAAAATTTC
1 ATAGTGTGG-TTATCAA-AATTTCATAG-GAAAGTTATCAAAATTTC
* * * * * *
7389 ACAGTGTGAATCGTGATCATTAAGAATTCATAAGG-ATGTTATAAAAAATATC
1 ATAGTGTG----GTTATCA--AA-ATTTCAT-AGGAAAGTTAT-CAAAATTTC
* * * * * *
7441 ATAGTGTGCTTACCAACATTTCACATGGAGA-TTACCAAAATTTC
1 ATAGTGTGGTTATCAAAATTTCATA-GGAAAGTTATCAAAATTTC
* ** *
7485 ATAGTGTGGTTATCAAAATTTAAGT-GGATGGTTATCGAAATTTC
1 ATAGTGTGGTTATCAAAATTTCA-TAGGAAAGTTATCAAAATTTC
* * * * *
7529 AGTAG-GAGGTCATCAAAATTTTATA-GAGAGATTAACAAAATTTC
1 A-TAGTGTGGTTATCAAAATTTCATAGGAAAG-TTATCAAAATTTC
* ** * ** ** * * * *
7573 ATAGGGAAGTTCTTGAAATTGGATTGGAAGGTTTTCGAAATTGT-
1 ATAGTGTGGTTATCAAAATTTCATAGGAAAGTTATCAAAATT-TC
* * * *
7617 ATAGTATCGTTATCAAAATTTCATACGAATGTTATCAAAA
1 ATAGTGTGGTTATCAAAATTTCATAGGAAAGTTATCAAAA
7657 GTTTATAAGG
Statistics
Matches: 741, Mismatches: 235, Indels: 176
0.64 0.20 0.15
Matches are distributed among these distances:
37 4 0.01
38 21 0.03
39 5 0.01
40 13 0.02
41 33 0.04
42 43 0.06
43 79 0.11
44 275 0.37
45 77 0.10
46 43 0.06
47 60 0.08
48 29 0.04
49 11 0.01
50 20 0.03
51 12 0.02
52 16 0.02
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (44 bp):
ATAGTGTGGTTATCAAAATTTCATAGGAAAGTTATCAAAATTTC
Found at i:6724 original size:91 final size:91
Alignment explanation
Indices: 6558--6725 Score: 205
Period size: 91 Copynumber: 1.8 Consensus size: 91
6548 TATAGTGTGA
* *
6558 TTATCAAAATTTCTTAGGAAGATTATCAAAATTTCACACTGAGGTAATCAAAATTTCACAGTGTG
1 TTATCAAAATTTCTTAGGAAGATTATCAAAATTTCACACTGAGGTAATCAAAATTTCACAGGGAG
* *
6623 GTTCTTAAAATTTCATCTGGATTATG
66 GTTATCAAAATTTCATCTGGATTATG
* * * * * *
6649 TTATTAAAATTT-TATAGGAA-AGTTATCAAAATTTCATAGTGTGGTTATCAAAATTTCATAGGG
1 TTATCAAAATTTCT-TAGGAAGA-TTATCAAAATTTCACACTGAGGTAATCAAAATTTCACAGGG
*
6712 AGTTTATCAAAATT
64 AGGTTATCAAAATT
6726 CCATAGCGAT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
90 2 0.03
91 62 0.97
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (91 bp):
TTATCAAAATTTCTTAGGAAGATTATCAAAATTTCACACTGAGGTAATCAAAATTTCACAGGGAG
GTTATCAAAATTTCATCTGGATTATG
Found at i:6983 original size:22 final size:22
Alignment explanation
Indices: 6922--7576 Score: 209
Period size: 22 Copynumber: 29.6 Consensus size: 22
6912 ATCAGATTAC
* *
6922 CAAAATTTCATA-AGATTGTTAT
1 CAAAATTTCATAGTGA-GGTTAT
* * **
6944 CAAAATTTTAAAACGAGGTTAT
1 CAAAATTTCATAGTGAGGTTAT
*
6966 CAAAATTTCCTAGTGAGGTTAT
1 CAAAATTTCATAGTGAGGTTAT
* * * **
6988 GAAAAAGTTTCGTATTGTTGTTAT
1 -CAAAA-TTTCATAGTGAGGTTAT
*
7012 TAAAATTTCATA-TGGAGGTT-T
1 CAAAATTTCATAGT-GAGGTTAT
*
7033 C-AAATTTCATAGT-ATGATTAT
1 CAAAATTTCATAGTGA-GGTTAT
*
7054 CAAAA-TTCATA-TAGAGGTTAG
1 CAAAATTTCATAGT-GAGGTTAT
* *
7075 CATAATTTCATTG-GAAGGTTAT
1 CAAAATTTCATAGTG-AGGTTAT
**
7097 TGAAATTTCATAAG-GAGGTTAT
1 CAAAATTTCAT-AGTGAGGTTAT
** *
7119 TGAAATTTCATAAG-GAGGATAT
1 CAAAATTTCAT-AGTGAGGTTAT
* *
7141 CAAAATTTCATAGTTTA-GTTTT
1 CAAAATTTCATAG-TGAGGTTAT
*
7163 CAAAATTTTATAG-G-GGTTAT
1 CAAAATTTCATAGTGAGGTTAT
* * *
7183 CAAAATTTCATTGGGAGGTTAA
1 CAAAATTTCATAGTGAGGTTAT
* *
7205 C-AAATTTCATAATGAAGTTAATTAT
1 CAAAATTTCATAGTG-AG---GTTAT
* * *
7230 CGAAAA-ATCATAGGGATGTTAT
1 C-AAAATTTCATAGTGAGGTTAT
7252 CAAAA-TT--T-GTGA--TTAT
1 CAAAATTTCATAGTGAGGTTAT
7268 CAAAATTTCATAAG-GAGGTTAT
1 CAAAATTTCAT-AGTGAGGTTAT
* * *
7290 TAAAATTTTATAGGGAGGTTTAT
1 CAAAATTTCATAGTGAGG-TTAT
* *
7313 CAAAATTTTATA-TGAATGTTCAT
1 CAAAATTTCATAGTG-AGGTT-AT
** *
7336 CAAAATTTCATACCG-GGATCAT
1 CAAAATTTCATAGTGAGG-TTAT
* * *
7358 -AACAATTTCGTAGTGTGATTAT
1 CAA-AATTTCATAGTGAGGTTAT
* * *
7380 CAAAATTTCACAGTGTGAATCGTGAT
1 CAAAATTTCATA--GTG-A-GGTTAT
* *
7406 CATTAAGAATTCATAAG-GATGTTAT
1 CA--AA-ATTTCAT-AGTGAGGTTAT
* * * * *
7431 AAAAAATATCATAGTGTGCTTAC
1 -CAAAATTTCATAGTGAGGTTAT
* * * *
7454 CAACATTTCACA-TGGAGATTAC
1 CAAAATTTCATAGT-GAGGTTAT
*
7476 CAAAATTTCATAGTGTGGTTAT
1 CAAAATTTCATAGTGAGGTTAT
7498 CAAAATTT-A-AGTGGATGGTTAT
1 CAAAATTTCATAGT-GA-GGTTAT
* *
7520 CGAAATTTCAGTAG-GAGGTCAT
1 CAAAATTTCA-TAGTGAGGTTAT
* * * *
7542 CAAAATTTTATAGAGAGATTAA
1 CAAAATTTCATAGTGAGGTTAT
7564 CAAAATTTCATAG
1 CAAAATTTCATAG
7577 GGAAGTTCTT
Statistics
Matches: 470, Mismatches: 104, Indels: 118
0.68 0.15 0.17
Matches are distributed among these distances:
16 9 0.02
17 2 0.00
18 3 0.01
19 3 0.01
20 34 0.07
21 49 0.10
22 254 0.54
23 60 0.13
24 19 0.04
25 11 0.02
26 13 0.03
27 4 0.01
28 3 0.01
29 5 0.01
30 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (22 bp):
CAAAATTTCATAGTGAGGTTAT
Found at i:7672 original size:22 final size:22
Alignment explanation
Indices: 7625--7675 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
7615 GTATAGTATC
* *
7625 GTTATCAAAATTTCATACGAAT
1 GTTATCAAAATTTCATAAGAAG
*
7647 GTTATCAAAAGTTT-ATAAGGAG
1 GTTATCAAAA-TTTCATAAGAAG
7669 GTTATCA
1 GTTATCA
7676 TAGGGAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (22 bp):
GTTATCAAAATTTCATAAGAAG
Found at i:9837 original size:15 final size:15
Alignment explanation
Indices: 9817--9852 Score: 63
Period size: 15 Copynumber: 2.3 Consensus size: 15
9807 GGTAAGAGTA
9817 CTGTTCTTGTTTGGT
1 CTGTTCTTGTTTGGT
9832 CTGTTCTTGTTTGGT
1 CTGTTCTTGTTTGGT
9847 CATGTT
1 C-TGTT
9853 GGTTTTGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.03, C:0.14, G:0.25, T:0.58
Consensus pattern (15 bp):
CTGTTCTTGTTTGGT
Found at i:10865 original size:13 final size:13
Alignment explanation
Indices: 10847--10871 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10837 ATTCTGTCAA
10847 ATTAATTATGGCT
1 ATTAATTATGGCT
10860 ATTAATTATGGC
1 ATTAATTATGGC
10872 ACGACTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
ATTAATTATGGCT
Found at i:12061 original size:19 final size:18
Alignment explanation
Indices: 12032--12073 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
12022 TATGGTAGTT
*
12032 AAGAGAGTGAGTAGGAGGA
1 AAGAGAATGAGTA-GAGGA
*
12051 GAGAGAATGAGTAGAGGA
1 AAGAGAATGAGTAGAGGA
12069 AAGAG
1 AAGAG
12074 TATAGGGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.10
Consensus pattern (18 bp):
AAGAGAATGAGTAGAGGA
Found at i:19719 original size:20 final size:20
Alignment explanation
Indices: 19695--19742 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
19685 TAAAATACTT
*
19695 TAAAAAAGAAAAA-AAAACG-
1 TAAAAAA-AAAAACAAAAAGA
19714 TAAAAAAAAAAACAAAAAGA
1 TAAAAAAAAAAACAAAAAGA
19734 TAAAAAAAA
1 TAAAAAAAA
19743 GTTCATCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 5 0.19
19 12 0.46
20 9 0.35
ACGTcount: A:0.83, C:0.04, G:0.06, T:0.06
Consensus pattern (20 bp):
TAAAAAAAAAAACAAAAAGA
Found at i:20988 original size:30 final size:31
Alignment explanation
Indices: 20936--21005 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 31
20926 TGATTTTATT
* *
20936 CTGAATTAACACAACCTGATAACGTTAG-ATC
1 CTGAATTAACACAACATGATAACGGT-GTATC
*
20967 CTGAATTGACACAA-ATGATAACGGTGTATC
1 CTGAATTAACACAACATGATAACGGTGTATC
20997 CTGAATTAA
1 CTGAATTAA
21006 ATTTTGAGGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.03
30 20 0.59
31 13 0.38
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (31 bp):
CTGAATTAACACAACATGATAACGGTGTATC
Found at i:44102 original size:59 final size:59
Alignment explanation
Indices: 44007--44121 Score: 160
Period size: 59 Copynumber: 1.9 Consensus size: 59
43997 CTAACATATT
*
44007 TTTGGTATAGATCCATCGATATTCGGTAATTATATCGCATACT-ATTGATTAATTCCACC
1 TTTGGTATAGATCCATCGATATTCAGTAATTATATCGCATA-TAATTGATTAATTCCACC
* * * *
44066 TTTGGTATAGATCCATCGATATTTAGTAGTTGTATCGTATATAAATTGATTAATTC
1 TTTGGTATAGATCCATCGATATTCAGTAATTATATCGCATAT-AATTGATTAATTC
44122 AAACTCAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 1 0.02
59 36 0.73
60 12 0.24
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.42
Consensus pattern (59 bp):
TTTGGTATAGATCCATCGATATTCAGTAATTATATCGCATATAATTGATTAATTCCACC
Found at i:44817 original size:26 final size:27
Alignment explanation
Indices: 44767--44820 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
44757 CTAAAACAAA
44767 ATTTGGTACAATAAAATCTAAATTGAGT
1 ATTTGGTACAAT-AAATCTAAATTGAGT
44795 ATTTGGTACAAT-AATCTAAATTGAGT
1 ATTTGGTACAATAAATCTAAATTGAGT
44821 TCGTGTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 14 0.54
28 12 0.46
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (27 bp):
ATTTGGTACAATAAATCTAAATTGAGT
Found at i:55947 original size:29 final size:29
Alignment explanation
Indices: 55888--55944 Score: 91
Period size: 27 Copynumber: 2.0 Consensus size: 29
55878 ATATATATAT
55888 ATATATATTAATATATATCACGAATTGAA
1 ATATATATTAATATATATCACGAATTGAA
*
55917 ATATATA-T-ATATATATCATGAATTGAA
1 ATATATATTAATATATATCACGAATTGAA
55944 A
1 A
55945 AATGCTGATG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 19 0.70
28 1 0.04
29 7 0.26
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (29 bp):
ATATATATTAATATATATCACGAATTGAA
Found at i:56574 original size:74 final size:74
Alignment explanation
Indices: 56453--56602 Score: 291
Period size: 74 Copynumber: 2.0 Consensus size: 74
56443 TTTATACTAG
56453 AGATATCATTAAGCAAAATTATAATACATTGTCAATGGAGTTTAGCATAAGTACACACTACACAT
1 AGATATCATTAAGCAAAATTATAATACATTGTCAATGGAGTTTAGCATAAGTACACACTACACAT
*
56518 GCGGGGTTA
66 GCGGAGTTA
56527 AGATATCATTAAGCAAAATTATAATACATTGTCAATGGAGTTTAGCATAAGTACACACTACACAT
1 AGATATCATTAAGCAAAATTATAATACATTGTCAATGGAGTTTAGCATAAGTACACACTACACAT
56592 GCGGAGTTA
66 GCGGAGTTA
56601 AG
1 AG
56603 GGTTGACATG
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (74 bp):
AGATATCATTAAGCAAAATTATAATACATTGTCAATGGAGTTTAGCATAAGTACACACTACACAT
GCGGAGTTA
Found at i:65265 original size:2 final size:2
Alignment explanation
Indices: 65258--65292 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
65248 TACAAGTAGT
65258 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
65293 TAATGGTTCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:67796 original size:31 final size:31
Alignment explanation
Indices: 67761--67822 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
67751 TACTAATTGA
67761 ATGAAGAATTCTAGACTCAAAAACATGAGTT
1 ATGAAGAATTCTAGACTCAAAAACATGAGTT
67792 ATGAAGAATTCTAGACTCAAAAACATGAGTT
1 ATGAAGAATTCTAGACTCAAAAACATGAGTT
67823 CGGATAGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (31 bp):
ATGAAGAATTCTAGACTCAAAAACATGAGTT
Found at i:68528 original size:147 final size:147
Alignment explanation
Indices: 68261--68540 Score: 436
Period size: 147 Copynumber: 1.9 Consensus size: 147
68251 TCAATTCCTA
* * * ** *
68261 CTACAAAATTCAATGTATTCGATCATCTTACTTGGCTAAAGCTTGAATGTGTTACCTTCAATAAT
1 CTACAAAATTCAAGGTATTCGATAATCTCACTTGGCTAAAGCTTGAAAATCTTACCTTCAATAAT
* * *
68326 GAGGGATTTGAGAATCTCATTGCCAAGAGCCCCCAACTTAGTACATTGGACTTGAATCGTGTTGA
66 GAAGGATTTGAGAATCTCATTGCCAAGAGCCCCCAACTTAATACATTGCACTTGAATCGTGTTGA
68391 TGGATTGAACATTCGTC
131 TGGATTGAACATTCGTC
68408 CTACAAAATTCAAGGTATTCGATAATCTCACTTGGCTAAAGCTTGAAAATCTTACCTTCAATAAT
1 CTACAAAATTCAAGGTATTCGATAATCTCACTTGGCTAAAGCTTGAAAATCTTACCTTCAATAAT
* * *
68473 GAAGGATTTGAGAATCTCATTGCCAAGTGCCCCCAACTTAATGA-ATTGCACTTGAATCTTGTTT
66 GAAGGATTTGAGAATCTCATTGCCAAGAGCCCCCAACTTAAT-ACATTGCACTTGAATCGTGTTG
68537 ATGG
130 ATGG
68541 CCTTGATGGA
Statistics
Matches: 120, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
147 119 0.99
148 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (147 bp):
CTACAAAATTCAAGGTATTCGATAATCTCACTTGGCTAAAGCTTGAAAATCTTACCTTCAATAAT
GAAGGATTTGAGAATCTCATTGCCAAGAGCCCCCAACTTAATACATTGCACTTGAATCGTGTTGA
TGGATTGAACATTCGTC
Found at i:71738 original size:60 final size:61
Alignment explanation
Indices: 71641--71794 Score: 197
Period size: 61 Copynumber: 2.6 Consensus size: 61
71631 AAAAATGACA
* * * * * *
71641 CGTGGCACATGTC-CTTTT-GTGCACGTGGCATGCCACGTGTCA-CTTTTGGTACACGTGG
1 CGTGACACATGTCACTTTTGGTACACGTGGCGTGACACGTGTCACCTTTTGGAACACATGG
*
71699 CGTGACACGTGTCACTTTTGGTACACGTGGCGTGACACGTGTCACCTTTTGGAACACATGG
1 CGTGACACATGTCACTTTTGGTACACGTGGCGTGACACGTGTCACCTTTTGGAACACATGG
* *
71760 CGTGCCACATGTTACCTTTTGGTACACGTGGCGTG
1 CGTGACACATGTCA-CTTTTGGTACACGTGGCGTG
71795 CCACTTTTTG
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
58 11 0.13
59 5 0.06
60 21 0.26
61 25 0.30
62 20 0.24
ACGTcount: A:0.16, C:0.25, G:0.29, T:0.30
Consensus pattern (61 bp):
CGTGACACATGTCACTTTTGGTACACGTGGCGTGACACGTGTCACCTTTTGGAACACATGG
Found at i:71795 original size:31 final size:31
Alignment explanation
Indices: 71653--71798 Score: 199
Period size: 30 Copynumber: 4.8 Consensus size: 31
71643 TGGCACATGT
* *
71653 CCTTTT-GTGCACGTGGCATGCCACGTGTCA
1 CCTTTTGGTACACGTGGCGTGCCACGTGTCA
*
71683 -CTTTTGGTACACGTGGCGTGACACGTGTCA
1 CCTTTTGGTACACGTGGCGTGCCACGTGTCA
*
71713 -CTTTTGGTACACGTGGCGTGACACGTGTCA
1 CCTTTTGGTACACGTGGCGTGCCACGTGTCA
* * * *
71743 CCTTTTGGAACACATGGCGTGCCACATGTTA
1 CCTTTTGGTACACGTGGCGTGCCACGTGTCA
71774 CCTTTTGGTACACGTGGCGTGCCAC
1 CCTTTTGGTACACGTGGCGTGCCAC
71799 TTTTTGGTAC
Statistics
Matches: 104, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
29 5 0.05
30 51 0.49
31 48 0.46
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.29
Consensus pattern (31 bp):
CCTTTTGGTACACGTGGCGTGCCACGTGTCA
Found at i:71804 original size:24 final size:24
Alignment explanation
Indices: 71776--71822 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
71766 ACATGTTACC
71776 TTTTGGTACACGTGGCGTGCCACT
1 TTTTGGTACACGTGGCGTGCCACT
*
71800 TTTTGGTACATGTGGCGTGCCAC
1 TTTTGGTACACGTGGCGTGCCAC
71823 ATCTTGGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.23, G:0.30, T:0.34
Consensus pattern (24 bp):
TTTTGGTACACGTGGCGTGCCACT
Found at i:71829 original size:24 final size:24
Alignment explanation
Indices: 71778--71834 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
71768 ATGTTACCTT
* *
71778 TTGGTACACGTGGCGTGCCACTTT
1 TTGGTACACGTGGCGTGCCACATC
*
71802 TTGGTACATGTGGCGTGCCACATC
1 TTGGTACACGTGGCGTGCCACATC
*
71826 TTGGCACAC
1 TTGGTACAC
71835 CACATCGGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.30
Consensus pattern (24 bp):
TTGGTACACGTGGCGTGCCACATC
Found at i:72819 original size:31 final size:30
Alignment explanation
Indices: 72728--72820 Score: 136
Period size: 31 Copynumber: 3.1 Consensus size: 30
72718 AACGGACTTA
*
72728 TTTGTCCCAAAA-AAAATATAAGGGATTTT
1 TTTGTCCCAAAAGAAAACATAAGGGATTTT
*
72757 TCTGTCCCAAAAGAAAAACATAAGGGATTTT
1 TTTGTCCCAAAAG-AAAACATAAGGGATTTT
72788 TTTGTCCCAAAAGAAAACATGAA-GGATTTT
1 TTTGTCCCAAAAGAAAACAT-AAGGGATTTT
72818 TTT
1 TTT
72821 AGTATTTAGT
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
29 11 0.19
30 17 0.29
31 30 0.52
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (30 bp):
TTTGTCCCAAAAGAAAACATAAGGGATTTT
Found at i:73709 original size:29 final size:31
Alignment explanation
Indices: 73649--73712 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
73639 GACTAAATAT
*
73649 CAAAAAAATCCTTTATGTTTTTCTTTTGGGA
1 CAAAAAAATCCCTTATGTTTTTCTTTTGGGA
*
73680 CAAAATAATCCCTTATGTTTTT-TTTT-GGA
1 CAAAAAAATCCCTTATGTTTTTCTTTTGGGA
73709 CAAA
1 CAAA
73713 TTAGTCCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 7 0.23
30 4 0.13
31 20 0.65
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (31 bp):
CAAAAAAATCCCTTATGTTTTTCTTTTGGGA
Found at i:73915 original size:31 final size:29
Alignment explanation
Indices: 73836--73915 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
73826 CTCATTTTTG
* * *
73836 AAACGTAAGGGATTAATTTGTCCCGAAAA
1 AAACATAAGGGATTATTTTGTCCCAAAAA
*
73865 AAACATATGGGATTATTTTGTCCCAAAAGCA
1 AAACATAAGGGATTATTTTGTCCCAAAA--A
* *
73896 AAACATAAGTGATTTTTTTG
1 AAACATAAGGGATTATTTTG
73916 GATATTTAGC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 24 0.57
31 18 0.43
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (29 bp):
AAACATAAGGGATTATTTTGTCCCAAAAA
Found at i:75687 original size:37 final size:37
Alignment explanation
Indices: 75646--75719 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
75636 TGTTCATTTT
75646 CTAGTGAAATTTTTAAAGATTATTATTGTTATTATAA
1 CTAGTGAAATTTTTAAAGATTATTATTGTTATTATAA
*
75683 CTAGTGAAATTTTTTAAGATTATTATTGTTATTATAA
1 CTAGTGAAATTTTTAAAGATTATTATTGTTATTATAA
75720 TGTGACATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.03, G:0.11, T:0.50
Consensus pattern (37 bp):
CTAGTGAAATTTTTAAAGATTATTATTGTTATTATAA
Found at i:76809 original size:1 final size:1
Alignment explanation
Indices: 76803--76827 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
76793 ACAAACAAAC
76803 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
76828 GGTGATTGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:82196 original size:21 final size:21
Alignment explanation
Indices: 82153--82196 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
82143 GAAAACGGGG
**
82153 TTGCTAAATACCGCCTTAGTT
1 TTGCTAAATACCGCCCCAGTT
*
82174 TTGCTAAATACCGCCCCATTT
1 TTGCTAAATACCGCCCCAGTT
82195 TT
1 TT
82197 TACACTTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.39
Consensus pattern (21 bp):
TTGCTAAATACCGCCCCAGTT
Found at i:82284 original size:33 final size:33
Alignment explanation
Indices: 82242--82339 Score: 153
Period size: 33 Copynumber: 3.0 Consensus size: 33
82232 CTTTTACACT
82242 GAGCCTCCCTACTAGGACGGCTCAGCCACGGCG
1 GAGCCTCCCTACTAGGACGGCTCAGCCACGGCG
82275 GAGCCTCCCTACTAGGACGGCTCAGCCACGGCG
1 GAGCCTCCCTACTAGGACGGCTCAGCCACGGCG
* * *
82308 GAGCCTCCCCACTGGGGCGGCTTC-GCCACGGC
1 GAGCCTCCCTACTAGGACGGC-TCAGCCACGGC
82340 AGGCCGCGCC
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
33 59 0.97
34 2 0.03
ACGTcount: A:0.15, C:0.41, G:0.32, T:0.12
Consensus pattern (33 bp):
GAGCCTCCCTACTAGGACGGCTCAGCCACGGCG
Found at i:83933 original size:5 final size:5
Alignment explanation
Indices: 83916--83945 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
83906 GTGTCCTCTA
83916 TTCTT TT-TT TTCTT TTCTT TTCTT TTCTT T
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT T
83946 CGCGCAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTCTT
Found at i:85400 original size:203 final size:202
Alignment explanation
Indices: 84833--85643 Score: 1561
Period size: 202 Copynumber: 4.0 Consensus size: 202
84823 AAGTAATCTT
* *
84833 TGTAATAGCTTTTTAGAACTAAGAAAGCATATTATTGTTGTTTCTTGTTGGAACTATTTTAGTGT
1 TGTAATAGCTTTTTAGAACTAAGAAAGCATATTATTGTTGTGTCTTATTGGAACTATTTTAGTGT
84898 TTAAATTTGGTAATATATGTTTGCATTATTGTAGAAACCGACAAGTATTTTGATCCTATGCAATA
66 TTAAATTTGGTAATATATGTTTGCATTATTGTAGAAACCGACAAGTATTTTGATCCTATGCAATA
*
84963 TTTATGGCTATGGTTTGTGTATGATCGTCACGTGTCAAATATCCGTTTTACCTGATTTTATTTGT
131 TTTATGGCTATGGTTTGTGTATGATCGTCACGTGTCAAATATCCGTTTTACCTGATTTCATTTGT
85028 TCATGTC
196 TCATGTC
85035 TGTAATAGCTTTTTAGAACTAAGAAAGCATATTATTGTTGTGTCTTATTGGAACTATTTTAGTGT
1 TGTAATAGCTTTTTAGAACTAAGAAAGCATATTATTGTTGTGTCTTATTGGAACTATTTTAGTGT
85100 TTAAATTTGGTAATATATGTTTGCATTATTGTAGAAACCGACAAGTATTTTGATCCTATGCAATA
66 TTAAATTTGGTAATATATGTTTGCATTATTGTAGAAACCGACAAGTATTTTGATCCTATGCAATA
*
85165 TTTATGGCTATGGTTTGTGTATGATCGTCACGTGTCAAATATCCGTTTTACCTGATTTTATTTGT
131 TTTATGGCTATGGTTTGTGTATGATCGTCACGTGTCAAATATCCGTTTTACCTGATTTCATTTGT
85230 TCATGTC
196 TCATGTC
85237 TGTAATAGCTTTTTAGTAACTAAGAAAGCATATTATTGTTGTGTCTTATTGGAACTATTTTAGTG
1 TGTAATAGCTTTTTAG-AACTAAGAAAGCATATTATTGTTGTGTCTTATTGGAACTATTTTAGTG
85302 TTTAAATTTGGTAATATATGTTTGCATTATTGTAGAAACCGACAAGTATTTTGATCCTATGCAAT
65 TTTAAATTTGGTAATATATGTTTGCATTATTGTAGAAACCGACAAGTATTTTGATCCTATGCAAT
85367 ATTTATGGCTATGGTTTGTGTATGATCGTCACGTGTCAAATATCCGTTTTACCTGATTTCATTTG
130 ATTTATGGCTATGGTTTGTGTATGATCGTCACGTGTCAAATATCCGTTTTACCTGATTTCATTTG
85432 TTCATGTC
195 TTCATGTC
85440 TGTAATAGCTTTTTAGAACTAAGAAAGCATATTATTGTTGTGTCTTATTGGAACTATTTTAGTGT
1 TGTAATAGCTTTTTAGAACTAAGAAAGCATATTATTGTTGTGTCTTATTGGAACTATTTTAGTGT
85505 TTAAATTTGGTAATATATGTTTGCATTATTGTAGAAACC-ACAAGTATTTTGATCCTATGCAATA
66 TTAAATTTGGTAATATATGTTTGCATTATTGTAGAAACCGACAAGTATTTTGATCCTATGCAATA
*
85569 TTTATGGCTATCGTTTGTGTATGATCGTCACGTGTCAAATATCCGTTTTACCTGATTTCATTTGT
131 TTTATGGCTATGGTTTGTGTATGATCGTCACGTGTCAAATATCCGTTTTACCTGATTTCATTTGT
85634 TCATGTC
196 TCATGTC
85641 TGT
1 TGT
85644 TCGTTACTAT
Statistics
Matches: 604, Mismatches: 4, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
201 99 0.16
202 304 0.50
203 201 0.33
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.44
Consensus pattern (202 bp):
TGTAATAGCTTTTTAGAACTAAGAAAGCATATTATTGTTGTGTCTTATTGGAACTATTTTAGTGT
TTAAATTTGGTAATATATGTTTGCATTATTGTAGAAACCGACAAGTATTTTGATCCTATGCAATA
TTTATGGCTATGGTTTGTGTATGATCGTCACGTGTCAAATATCCGTTTTACCTGATTTCATTTGT
TCATGTC
Found at i:89772 original size:19 final size:20
Alignment explanation
Indices: 89731--89772 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
89721 GGTTTATCAG
* * *
89731 TGTTTTTCTTTTTAATTTTT
1 TGTTTTTCTTCTTAACTTCT
89751 TGTTTTT-TTCTTAACTTCT
1 TGTTTTTCTTCTTAACTTCT
89770 TGT
1 TGT
89773 ATCCGTGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.10, C:0.10, G:0.07, T:0.74
Consensus pattern (20 bp):
TGTTTTTCTTCTTAACTTCT
Found at i:99424 original size:14 final size:14
Alignment explanation
Indices: 99405--99432 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
99395 TCTTCTTTGT
99405 AAAATGAGTGATGA
1 AAAATGAGTGATGA
99419 AAAATGAGTGATGA
1 AAAATGAGTGATGA
99433 TGGTAACTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (14 bp):
AAAATGAGTGATGA
Found at i:102475 original size:30 final size:30
Alignment explanation
Indices: 102440--102498 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
102430 TCTGAGTGTT
*
102440 TATATTTTTAATACTAATTAAATTTAGTAA
1 TATATTTCTAATACTAATTAAATTTAGTAA
*
102470 TATATTTCTAGTACTAATTAAATTTAGTA
1 TATATTTCTAATACTAATTAAATTTAGTA
102499 TAACATGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (30 bp):
TATATTTCTAATACTAATTAAATTTAGTAA
Found at i:102855 original size:29 final size:30
Alignment explanation
Indices: 102818--102893 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
102808 TTTGCTAATG
*
102818 TTTAGACTCAATTTGGTCACATT-TAAAGA
1 TTTAGACTCAATTTGGTAACATTATAAAGA
* ** *
102847 TTTAGACTCAAATTGAGTAAGTTTATAAAGG
1 TTTAGACTCAATTTG-GTAACATTATAAAGA
*
102878 TTTAGACCCAATTTGG
1 TTTAGACTCAATTTGG
102894 ATATTAGTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 14 0.37
30 6 0.16
31 18 0.47
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (30 bp):
TTTAGACTCAATTTGGTAACATTATAAAGA
Found at i:103319 original size:6 final size:6
Alignment explanation
Indices: 103304--103335 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
103294 TCGACCATGA
*
103304 CTCTGT CTCTGC CTCTGC CTCTGC CTCTGC CT
1 CTCTGC CTCTGC CTCTGC CTCTGC CTCTGC CT
103336 ATGTCTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.47, G:0.16, T:0.38
Consensus pattern (6 bp):
CTCTGC
Found at i:107749 original size:38 final size:38
Alignment explanation
Indices: 107707--107798 Score: 184
Period size: 38 Copynumber: 2.4 Consensus size: 38
107697 TTATGTGTAC
107707 TATAATTGTCCATTTCTTCTTTTTTTTTTTTGGATAAA
1 TATAATTGTCCATTTCTTCTTTTTTTTTTTTGGATAAA
107745 TATAATTGTCCATTTCTTCTTTTTTTTTTTTGGATAAA
1 TATAATTGTCCATTTCTTCTTTTTTTTTTTTGGATAAA
107783 TATAATTGTCCATTTC
1 TATAATTGTCCATTTC
107799 ACATTAGCCT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.22, C:0.12, G:0.08, T:0.59
Consensus pattern (38 bp):
TATAATTGTCCATTTCTTCTTTTTTTTTTTTGGATAAA
Found at i:116248 original size:16 final size:16
Alignment explanation
Indices: 116227--116271 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 16
116217 TAAAGGATTA
116227 ATGTACCTATACAATT
1 ATGTACCTATACAATT
* *
116243 ATGTACCCA-A-AA-A
1 ATGTACCTATACAATT
116256 ATGTACCTATACAATT
1 ATGTACCTATACAATT
116272 TGATCATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 6
0.69 0.12 0.19
Matches are distributed among these distances:
13 8 0.36
14 3 0.14
15 3 0.14
16 8 0.36
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (16 bp):
ATGTACCTATACAATT
Found at i:116597 original size:3 final size:3
Alignment explanation
Indices: 116589--116636 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
116579 GTTTGATTCT
116589 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
116637 CAACGAGAGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:117852 original size:10 final size:10
Alignment explanation
Indices: 117837--117879 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
117827 TAGCAATAAA
117837 TAGTAAATAT
1 TAGTAAATAT
117847 TAGTAAATAT
1 TAGTAAATAT
* *
117857 TAG-CAATAAA
1 TAGTAAAT-AT
117867 TAGTAAATAT
1 TAGTAAATAT
117877 TAG
1 TAG
117880 CAATAAACAC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
9 3 0.11
10 21 0.78
11 3 0.11
ACGTcount: A:0.51, C:0.02, G:0.12, T:0.35
Consensus pattern (10 bp):
TAGTAAATAT
Found at i:117856 original size:30 final size:30
Alignment explanation
Indices: 117799--117879 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
117789 TGGGTTAAAG
117799 TTAGCAATAAATAGTAAATA-T--TAAATA
1 TTAGCAATAAATAGTAAATATTAGTAAATA
117826 TTAGCAATAAATAGTAAATATTAGTAAATA
1 TTAGCAATAAATAGTAAATATTAGTAAATA
117856 TTAGCAATAAATAGTAAATATTAG
1 TTAGCAATAAATAGTAAATATTAG
117880 CAATAAACAC
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
27 20 0.39
28 1 0.02
30 30 0.59
ACGTcount: A:0.53, C:0.04, G:0.10, T:0.33
Consensus pattern (30 bp):
TTAGCAATAAATAGTAAATATTAGTAAATA
Found at i:117872 original size:20 final size:20
Alignment explanation
Indices: 117847--117886 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
117837 TAGTAAATAT
117847 TAGTAAATATTAGCAATAAA
1 TAGTAAATATTAGCAATAAA
117867 TAGTAAATATTAGCAATAAA
1 TAGTAAATATTAGCAATAAA
117887 CACTGAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.10, T:0.30
Consensus pattern (20 bp):
TAGTAAATATTAGCAATAAA
Found at i:126658 original size:6 final size:6
Alignment explanation
Indices: 126647--126671 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
126637 TAAAAAAATT
126647 GTTTTG GTTTTG GTTTTG GTTTTG G
1 GTTTTG GTTTTG GTTTTG GTTTTG G
126672 ATTGAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.36, T:0.64
Consensus pattern (6 bp):
GTTTTG
Found at i:138080 original size:6 final size:6
Alignment explanation
Indices: 138069--138110 Score: 66
Period size: 6 Copynumber: 6.8 Consensus size: 6
138059 GTTTCAACGT
*
138069 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAAA TGAAAA TAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA T-AAAAA TAAAAA TAAAA
138111 TATATGTAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:138092 original size:13 final size:13
Alignment explanation
Indices: 138070--138110 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
138060 TTTCAACGTT
138070 AAAAATAAAAAT-
1 AAAAATAAAAATA
138082 AAAAATAAAAATA
1 AAAAATAAAAATA
*
138095 AAAAATGAAAATA
1 AAAAATAAAAATA
138108 AAA
1 AAA
138111 TATATGTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 12 0.44
13 15 0.56
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:138112 original size:18 final size:19
Alignment explanation
Indices: 138069--138110 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
138059 GTTTCAACGT
138069 TAAAAAT-AAAAATAAAAA
1 TAAAAATAAAAAATAAAAA
*
138087 TAAAAATAAAAAATGAAAA
1 TAAAAATAAAAAATAAAAA
138106 TAAAA
1 TAAAA
138111 TATATGTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (19 bp):
TAAAAATAAAAAATAAAAA
Found at i:141940 original size:29 final size:29
Alignment explanation
Indices: 141907--141976 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
141897 CTTATAGTGT
141907 TTGGACGTTTTGCCACATAAACTTCAATC
1 TTGGACGTTTTGCCACATAAACTTCAATC
* * * * *
141936 TTGGACATTTTGCCCCCTGAACTTCAATT
1 TTGGACGTTTTGCCACATAAACTTCAATC
141965 TTGGGACGTTTT
1 TT-GGACGTTTT
141977 ACCCCCTCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 26 0.76
30 8 0.24
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (29 bp):
TTGGACGTTTTGCCACATAAACTTCAATC
Found at i:142308 original size:26 final size:28
Alignment explanation
Indices: 142279--142334 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
142269 AGAATTAACA
*
142279 TTTGTGAGTTGTT-A-GAAGAAGATGGT
1 TTTGTGAGTTCTTGAGGAAGAAGATGGT
142305 TTTGTGAGTTCTTGGAGGAAGAAGATGGT
1 TTTGTGAGTTCTT-GAGGAAGAAGATGGT
142334 T
1 T
142335 GTTCATAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 12 0.46
28 1 0.04
29 13 0.50
ACGTcount: A:0.25, C:0.02, G:0.36, T:0.38
Consensus pattern (28 bp):
TTTGTGAGTTCTTGAGGAAGAAGATGGT
Found at i:144980 original size:24 final size:22
Alignment explanation
Indices: 144929--144979 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
144919 GGGTATCTTA
*
144929 TTATATGGTAAACCATTCAAAT
1 TTATATAGTAAACCATTCAAAT
* *
144951 TTATATAGTAAATCATTCGAAT
1 TTATATAGTAAACCATTCAAAT
*
144973 TTCTATA
1 TTATATA
144980 TTCTCTATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (22 bp):
TTATATAGTAAACCATTCAAAT
Found at i:145168 original size:101 final size:97
Alignment explanation
Indices: 144993--145196 Score: 354
Period size: 101 Copynumber: 2.1 Consensus size: 97
144983 TCTATGAAGA
*
144993 TTGGATATTGTGACGAATGGAATCTGATATAACCATTTTTAACCCACATTAATATGGTCTTTTCC
1 TTGGATATTGTGACGAACGGAATCTGATATAACCATTTTTAACCCACATTAATATGGTCTTTTCC
145058 AATATTTTGATATATATATGTCTTTGGAATAATGTT
66 AATATTTTG----ATATATGTCTTTGGAATAATGTT
*
145094 TTGGATATTGTGACGGACGGAATCTGATATAACCATTTTTAACCCACATTAATATGGTCTTTTCC
1 TTGGATATTGTGACGAACGGAATCTGATATAACCATTTTTAACCCACATTAATATGGTCTTTTCC
145159 AATATTTTGATATATGTCTTTGGAATAATGTT
66 AATATTTTGATATATGTCTTTGGAATAATGTT
145191 TTGGAT
1 TTGGAT
145197 CATGAATTCC
Statistics
Matches: 101, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
97 29 0.29
101 72 0.71
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.42
Consensus pattern (97 bp):
TTGGATATTGTGACGAACGGAATCTGATATAACCATTTTTAACCCACATTAATATGGTCTTTTCC
AATATTTTGATATATGTCTTTGGAATAATGTT
Found at i:145518 original size:21 final size:20
Alignment explanation
Indices: 145471--145519 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
145461 TAGAACCGAA
*
145471 TATACTTTAGTTAGATTTTTT
1 TATA-TTTAGTTAGATATTTT
* *
145492 TTTATTTAGTTTATATATTTT
1 TATATTTAG-TTAGATATTTT
145513 TATATTT
1 TATATTT
145520 TAGAATTAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.24, C:0.02, G:0.06, T:0.67
Consensus pattern (20 bp):
TATATTTAGTTAGATATTTT
Found at i:146003 original size:24 final size:22
Alignment explanation
Indices: 145952--146002 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
145942 GGGTATCTTA
*
145952 TTATATGGTAAACCATTCAAAT
1 TTATATAGTAAACCATTCAAAT
* *
145974 TTATATAGTAAATCATTCGAAT
1 TTATATAGTAAACCATTCAAAT
*
145996 TTCTATA
1 TTATATA
146003 TTCTCTATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (22 bp):
TTATATAGTAAACCATTCAAAT
Found at i:147712 original size:330 final size:328
Alignment explanation
Indices: 146977--147820 Score: 967
Period size: 330 Copynumber: 2.6 Consensus size: 328
146967 ATACTTTACA
* * *
146977 TCATCTAACCAAATCTCAGCAACATTGGATTTAAGAATTTTTTTTA-GAGCATCTGAATCTTGTT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTTTTTTACGAGCATCTGAATCTTTTT
* * * * * *
147041 ACACCTTAATTAGAAATTAATTTAGAAAAAATAACAAATACGATATTAAAAGCGTAAAAAGCCCT
66 AGA-TTTAATTAGAAATTAATTT-GGAAAAATAAGAAAAACGATATTAAAAGCGTAAAAATCCCT
*
147106 CCAATCTTTTTGGCGTTGAATTATATATTTTTATGAGTATTTTAGACAAAAATTGAGGAGAAATC
129 CCAATCTTTTTGGCGTTGAATTATATATTTTTATGAGTATTTTAGCCAAAAATTGAGGAGAAATC
* * * *
147171 TTTTGTGTCATTTTTACAAAATTTTAGTCGAAATCGTGTACTAACAAACCATCACAGTTTTTAGC
194 TTTTCTATCATTTTTACAAAATCTTAGCCGAAATCGTG-A-TAACAAACCATCACAGTTTTTAGC
* * *
147236 TAAAAACGCGTTCCGAGGATTGGCTAAATTTTGTATGATTTTTGGCTCCGAGATTACTTGAAATA
257 TAAAAACGCGTTCCGAGGATTGGCTAAATTTTGCATGATTTTTGGATCCAAGATTACTTGAAATA
147301 TCTATAC
322 TCTATAC
* * * *
147308 TCAACTAATCAAATCTTAACCACATTGGATTTAAGGATTTTTTTTACGAGCATCTGAATCTTGTT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTTTTTTACGAGCATCTGAATCTT-TT
* * * *
147373 TCGATTTAATTAGAAATTAATTTGGAAAAATAGGAAAAATGATATTAGAAA-CGTCAAAATCCCT
65 TAGATTTAATTAGAAATTAATTTGGAAAAATAAGAAAAACGATATTA-AAAGCGTAAAAATCCCT
* *
147437 TCAATATTTTTGGCGTTGAATTATATATTTCTTATGAGTATTTTAGCCAAAAATTGAGGA-AATA
129 CCAATCTTTTTGGCGTTGAATTATATATTT-TTATGAGTATTTTAGCCAAAAATTGAGGAGAA-A
* *
147501 T-TTTTCTAATCAATTTTTACAAAATCTTAGCCGAAATCGTG-TAA-TAACCATCACAGTTTTTG
192 TCTTTTCT-ATC-ATTTTTACAAAATCTTAGCCGAAATCGTGATAACAAACCATCACAGTTTTTA
* *** * *
147563 GCTTAAAAA-GCGTTCTG-GG-TCCTGGCTCGGTTTTGCATGATTTTT-TATGCCAAG-TCTCCC
255 GC-TAAAAACGCGTTCCGAGGAT--TGGCTAAATTTTGCATGATTTTTGGAT-CCAAGAT-T-AC
*
147623 TTGAAATAT-TCATAT
314 TTGAAATATCT-ATAC
* * * *
147638 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTACAAGCATATAAATCTTATT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTTTTTTACGAGCATCTGAATCTT-TT
* ** * *
147703 TTGATTTAATTAGAAATTAATTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGT-CCT
65 TAGATTTAATTAGAAATTAATTTGGAAAAATAAGAAAAACGATATTAAAAGCGT-AAAAATCCCT
* * * * *
147767 CCAATCTTTTTGGCGTTAAATTATATATAATTTATTAGTATTTTATCCAGAAAT
129 CCAATCTTTTTGGCGTTGAATTATATAT-TTTTATGAGTATTTTAGCCAAAAAT
147821 AAGGGAAAAC
Statistics
Matches: 437, Mismatches: 59, Indels: 35
0.82 0.11 0.07
Matches are distributed among these distances:
327 1 0.00
328 4 0.01
329 53 0.12
330 171 0.39
331 110 0.25
332 68 0.16
333 30 0.07
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (328 bp):
TCATCTAATCAAATCTCAGCCACATTGGATTTAAGAATTTTTTTTACGAGCATCTGAATCTTTTT
AGATTTAATTAGAAATTAATTTGGAAAAATAAGAAAAACGATATTAAAAGCGTAAAAATCCCTCC
AATCTTTTTGGCGTTGAATTATATATTTTTATGAGTATTTTAGCCAAAAATTGAGGAGAAATCTT
TTCTATCATTTTTACAAAATCTTAGCCGAAATCGTGATAACAAACCATCACAGTTTTTAGCTAAA
AACGCGTTCCGAGGATTGGCTAAATTTTGCATGATTTTTGGATCCAAGATTACTTGAAATATCTA
TAC
Done.