genome.fa.s14893.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014893.1 Corchorus capsularis cultivar CVL-1 contig14914, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70173

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2040--2078	20	2.0	20	89	0	60	66	5	10	17	1.39
7127--7152	12	2.2	12	100	0	52	7	23	34	34	1.83
23334--23371	20	1.9	20	88	0	58	47	5	2	44	1.39
27045--27085	6	7.3	6	84	15	61	34	17	0	48	1.47
27045--27085	10	3.8	10	90	9	55	34	17	0	48	1.47
27050--27088	16	2.5	15	91	4	60	35	15	0	48	1.45
27347--27380	18	1.9	17	94	5	59	41	0	0	58	0.98
27647--27686	14	2.7	14	88	7	53	12	5	35	47	1.63
29542--29585	17	2.3	20	88	11	67	0	29	0	70	0.88
29538--29587	19	2.5	21	75	21	54	0	30	0	70	0.88
29538--29593	17	3.3	17	75	22	55	0	32	0	67	0.91
29538--29604	32	2.0	33	85	5	91	0	34	0	65	0.93
31921--31991	30	2.4	29	86	11	83	23	18	9	47	1.78
32219--32293	29	2.5	30	84	2	98	41	12	24	22	1.87
33280--33318	17	2.5	16	88	12	55	43	0	2	53	1.14
43951--44073	56	2.2	58	91	2	196	31	13	13	42	1.82
46038--46072	17	2.0	18	94	5	63	17	22	22	37	1.94
56352--56511	31	5.5	31	76	13	140	16	21	28	33	1.95
56400--56501	53	1.9	53	89	0	159	15	17	29	37	1.91
56770--56835	34	1.9	34	87	6	98	42	7	25	24	1.81
57907--57951	19	2.3	19	84	3	54	0	15	4	80	0.87
58663--58688	13	2.0	13	100	0	52	53	15	23	7	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69360--69435	29	2.6	30	83	6	84	18	27	14	39	1.90
69327--69435	29	3.7	29	71	8	76	18	27	15	38	1.91
69495--69558	30	2.2	30	88	2	94	35	14	29	20	1.92

Tables:   1

The End!