Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014896.1 Corchorus capsularis cultivar CVL-1 contig14917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24064

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1689--1728
12
3.3
12
85
0
53
20
0
10
70
1.16
1689--1722
15
2.3
15
89
0
50
20
0
11
67
1.21
1776--1808
17
1.9
17
88
11
50
60
0
0
39
0.97
4879--4917
20
2.0
20
94
0
69
25
15
28
30
1.96
5436--5804
156
2.4
154
82
7
417
35
19
14
30
1.92
6611--6642
2
16.0
2
93
0
55
50
0
3
46
1.17
13148--13183
2
18.5
2
94
5
65
50
0
0
50
1.00
13290--13779
22
22.6
21
68
15
164
36
15
9
38
1.80
13339--13395
21
2.6
21
78
13
62
31
12
3
52
1.55
13452--13512
20
2.9
19
76
16
50
37
19
13
29
1.90
13600--13681
23
3.7
21
83
8
92
37
13
7
41
1.72
13578--13679
45
2.3
46
83
6
120
38
14
8
38
1.78
13908--14032
22
5.7
22
73
7
85
32
14
9
43
1.78
13994--14072
22
3.6
22
83
5
90
32
12
11
43
1.79
14110--14425
22
14.6
22
69
15
119
37
17
9
35
1.82
14295--14394
44
2.3
43
89
5
155
35
18
12
35
1.87
14297--14428
66
2.0
66
82
8
162
37
16
10
34
1.83
14478--14502
13
1.9
13
100
0
50
64
0
0
36
0.94
14478--14527
12
3.8
12
80
17
55
66
0
4
30
1.10
14503--14540
20
1.9
19
94
5
67
65
0
10
23
1.23
14482--14534
27
1.9
28
84
3
72
62
0
7
30
1.23
15608--15645
11
3.5
11
89
10
51
39
0
2
57
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16331--16361
10
3.1
10
100
0
62
61
9
9
19
1.54
16431--16473
20
2.1
21
87
12
63
16
44
9
30
1.79
16548--16602
25
2.3
25
90
6
87
32
23
0
43
1.54
16621--16667
11
3.9
11
80
20
58
55
10
0
34
1.35
16611--16678
26
2.6
26
95
0
118
54
11
1
32
1.46
16632--16682
15
3.7
15
75
21
58
56
13
0
29
1.38
16732--16772
18
2.4
18
88
8
59
70
2
0
26
0.99
16996--17039
20
2.1
21
91
4
72
34
9
38
18
1.82
20684--20767
40
2.1
41
88
2
125
39
19
11
29
1.87

Tables:   1

The End!