genome.fa.s14898.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014898.1 Corchorus capsularis cultivar CVL-1 contig14919, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56760

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1292--1347	18	3.4	18	68	27	61	35	8	32	23	1.86
1290--1360	30	2.4	30	92	0	124	32	15	30	21	1.94
2365--2420	18	3.4	18	68	27	61	35	8	32	23	1.86
2363--2433	30	2.4	30	92	0	124	32	15	30	21	1.94
955--2618	529	3.1	536	88	7	2336	34	14	17	32	1.91
4037--4087	26	2.0	25	92	3	84	21	25	11	41	1.87
8073--8147	23	3.2	23	81	9	98	18	13	21	46	1.83
9111--9213	53	1.9	53	86	0	143	35	26	19	18	1.95
9163--9261	31	3.2	31	80	0	108	34	26	19	20	1.96
11420--11467	23	2.1	23	100	0	96	20	10	35	33	1.87
11935--12030	49	2.0	49	95	0	174	27	38	16	17	1.91
12311--12425	57	2.0	58	94	1	205	26	25	14	33	1.95
14262--14331	34	2.1	34	100	0	140	40	17	25	17	1.90
22274--22310	17	2.2	17	100	0	74	59	5	5	29	1.42
22348--22377	15	2.0	15	100	0	60	33	20	20	26	1.97
23229--23261	12	2.8	12	95	0	57	48	6	9	36	1.60
25008--25042	14	2.4	15	85	4	54	28	5	2	62	1.32
32267--32358	16	5.8	15	74	14	69	8	20	36	33	1.84
32550--32631	42	2.0	42	97	0	155	37	3	18	40	1.68
33180--33259	33	2.5	32	83	4	106	12	18	35	33	1.89
35085--35264	90	2.0	90	92	2	299	17	22	12	46	1.82
40289--40371	32	2.6	32	90	1	121	51	18	10	19	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40638--40671	11	3.2	10	84	15	50	29	2	17	50	1.61
47701--47730	15	1.9	16	93	6	53	76	10	13	0	1.01
48834--48870	18	2.1	18	100	0	74	27	10	21	40	1.86
52157--52207	26	2.0	26	92	0	84	45	0	25	29	1.54
55582--55627	20	2.2	21	88	3	67	21	8	4	65	1.38
55889--55922	17	1.9	18	88	5	52	52	8	20	17	1.71

Tables:   1

The End!