Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014903.1 Corchorus capsularis cultivar CVL-1 contig14924, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98293

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1176--1242
28
2.3
29
76
7
73
46
8
20
23
1.79
26841--26896
18
3.1
18
92
0
94
23
28
23
25
1.99
32673--32702
1
30.0
1
100
0
60
100
0
0
0
0.00
35521--35707
102
1.8
102
79
4
216
35
10
2
51
1.49
35986--36037
26
2.1
26
85
7
72
38
9
1
50
1.46
35903--36234
157
2.1
158
78
8
347
37
9
3
49
1.51
39157--39214
10
5.8
10
80
10
57
20
1
3
74
1.06
41273--41298
10
2.6
10
100
0
52
50
19
7
23
1.73
42223--42249
6
4.5
6
100
0
54
29
0
14
55
1.40
42563--42623
25
2.7
23
85
14
90
47
6
14
31
1.70
49278--49304
6
4.5
6
100
0
54
29
0
14
55
1.40
61603--61685
29
2.7
32
76
7
84
30
16
9
43
1.80
61774--61824
18
2.9
17
88
8
75
29
0
0
70
0.87
61774--61826
10
5.7
10
74
17
51
32
0
0
67
0.91
62076--62147
30
2.4
30
100
0
144
56
13
0
29
1.38
68883--68952
26
2.6
27
84
8
90
37
24
17
21
1.94
74148--74304
34
4.7
34
73
9
117
27
0
8
63
1.27
74182--74276
22
4.2
21
74
12
82
27
1
8
63
1.30
74154--74305
19
8.5
18
71
20
79
27
0
8
63
1.28
74150--74305
3
50.3
3
68
13
84
27
0
8
63
1.27
77264--77325
3
20.0
3
76
15
56
61
4
0
33
1.17
77264--77321
25
2.5
23
76
18
66
62
5
0
32
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77275--77352
36
2.2
36
84
9
97
57
3
1
37
1.25
77291--77355
28
2.4
27
84
2
85
58
1
1
38
1.17
86366--86558
93
2.1
94
94
2
334
28
14
15
41
1.86
92101--92141
21
2.0
21
85
9
57
56
7
7
29
1.54
92130--92200
27
2.8
25
89
6
99
42
29
12
15
1.84
94818--94879
11
5.9
11
80
14
60
41
3
17
37
1.66
94821--94892
30
2.3
31
81
11
85
43
2
19
34
1.66
94832--94870
18
2.1
19
90
4
62
43
2
20
33
1.65
94821--94897
41
1.9
40
84
7
102
42
2
20
33
1.66
95448--95483
18
2.1
17
89
5
54
11
13
8
66
1.44
98021--98065
23
2.0
23
86
0
63
8
15
15
60
1.59

Tables:   1

The End!