genome.fa.s14911.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014911.1 Corchorus capsularis cultivar CVL-1 contig14932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76083

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1578--1699	16	7.8	16	86	6	169	5	13	37	42	1.69
1578--1718	31	4.4	32	84	8	155	6	14	38	41	1.71
1578--1717	48	2.9	47	84	5	174	6	14	38	40	1.71
2470--2524	16	3.4	17	82	7	60	0	20	49	30	1.49
2498--2539	16	2.6	16	88	7	59	2	16	45	35	1.61
3147--3412	114	2.3	114	82	4	322	31	22	22	23	1.98
3372--3443	32	2.3	31	81	9	83	26	26	27	19	1.99
3260--3530	145	1.9	145	82	5	341	32	21	21	24	1.98
6226--6257	14	2.3	14	100	0	64	31	6	12	50	1.65
6696--6738	15	2.9	15	80	19	54	32	9	9	48	1.67
7147--7283	59	2.3	60	92	2	222	35	17	12	35	1.87
7280--7396	56	2.1	56	95	1	209	28	16	17	38	1.91
10287--10349	31	2.0	32	93	3	110	17	6	34	41	1.75
10298--10345	15	3.1	15	70	5	51	16	8	35	39	1.79
14458--14630	26	6.6	26	78	15	164	54	7	21	15	1.65
14494--14544	16	3.5	16	70	25	58	54	9	21	13	1.67
14451--14602	79	1.9	80	93	4	263	54	7	21	15	1.66
14478--14630	52	2.9	53	88	5	213	54	7	22	15	1.67
14744--14812	14	4.9	14	75	3	75	60	2	18	17	1.48
14708--14805	43	2.3	43	82	7	110	57	3	20	19	1.54
14747--14812	29	2.3	28	89	5	105	62	3	18	16	1.46
14780--14822	21	2.0	21	95	0	77	55	4	20	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14787--14906	21	5.6	21	72	12	84	55	4	22	18	1.60
14892--15140	47	4.8	55	84	12	332	49	7	18	24	1.73
14884--15140	102	2.5	102	83	13	334	49	7	19	24	1.72
15094--15126	15	2.2	15	89	10	50	51	9	15	24	1.72
15095--15228	71	1.9	71	92	3	225	50	6	15	26	1.69
15096--15228	34	3.8	36	74	16	127	50	6	15	27	1.69
15542--15792	27	9.6	25	71	21	85	53	2	23	19	1.58
15622--15662	19	2.2	18	83	12	55	56	0	24	19	1.42
15651--15704	16	3.4	16	69	21	51	55	0	22	22	1.44
15641--15807	26	6.2	26	72	22	112	53	2	22	20	1.59
29206--29648	167	2.7	165	87	2	611	39	16	14	29	1.88
30164--30253	45	2.0	45	95	0	162	25	23	18	32	1.97
31794--31835	20	2.1	20	100	0	84	35	14	9	40	1.78
33194--33298	56	1.9	56	92	2	176	39	26	17	17	1.91
33194--33292	29	3.7	26	70	20	69	39	27	15	18	1.90
33216--33301	27	3.1	28	75	17	90	39	25	15	19	1.91
35742--35821	40	2.0	40	90	0	124	23	22	20	33	1.97
36642--36985	58	5.9	58	93	1	593	41	24	13	19	1.88
36639--36973	26	11.7	27	68	26	171	41	25	13	20	1.88
41595--41679	35	2.4	35	78	0	80	25	24	20	29	1.99
42046--42320	72	3.8	73	87	2	396	21	27	19	31	1.97
42046--42317	144	1.9	144	92	3	458	21	27	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42976--43006	16	1.9	16	93	0	53	32	22	29	16	1.95
47099--47147	21	2.3	21	82	6	55	40	16	28	14	1.87
54038--54086	20	2.4	20	86	3	71	42	30	14	12	1.82
54685--54780	29	3.2	29	64	21	70	35	19	23	20	1.96
54679--54780	34	3.2	34	61	21	83	36	20	23	19	1.95
54653--54809	62	2.5	62	93	2	262	33	20	25	20	1.97
54664--54757	28	3.1	28	62	21	64	35	20	25	19	1.96
63814--63878	29	2.2	29	94	0	112	46	13	21	18	1.84
66169--66227	24	2.4	25	79	20	72	61	5	6	27	1.43
71547--71862	49	6.4	49	85	2	429	32	14	28	24	1.94
71547--71870	98	3.3	99	89	2	494	33	14	28	24	1.94

Tables:   1

The End!