Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014917.1 Corchorus capsularis cultivar CVL-1 contig14938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22342

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2159--2196
19
2.1
18
90
5
58
31
21
2
44
1.66
2175--2206
11
2.9
11
90
0
55
43
18
0
37
1.51
2147--2206
22
2.9
22
76
19
65
36
18
3
41
1.67
3724--3768
22
2.2
20
84
8
54
28
24
2
44
1.66
6149--6224
40
1.9
40
91
0
125
48
21
19
10
1.78
7311--7346
18
2.0
18
88
0
54
41
19
8
30
1.81
7917--8135
72
3.0
72
90
0
339
15
33
25
25
1.95
8315--8464
50
3.0
49
90
2
228
12
27
32
28
1.93
8351--8442
30
3.4
28
70
27
83
10
28
32
28
1.91
8381--8462
20
3.6
20
69
27
65
9
28
34
28
1.89
8629--8860
90
2.6
90
84
5
281
40
17
11
31
1.85
10857--10890
11
3.0
11
87
8
50
85
0
14
0
0.60
10856--10887
17
1.9
16
93
6
55
84
0
15
0
0.63
11206--11230
13
1.9
13
100
0
50
16
36
0
48
1.46
12037--12082
22
2.1
22
95
0
83
41
8
28
21
1.83
12126--12168
21
2.0
21
86
0
59
16
37
2
44
1.60
14003--14976
487
2.0
487
92
0
1626
32
19
18
29
1.96
20123--20179
13
4.3
14
83
14
68
40
15
7
36
1.75
20123--20171
14
3.8
13
84
12
57
38
18
6
36
1.76
20129--20179
14
3.8
13
77
12
50
37
13
7
41
1.74
21308--21384
27
2.9
26
78
3
91
20
12
22
44
1.86

Tables:   1

The End!