genome.fa.s14921.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014921.1 Corchorus capsularis cultivar CVL-1 contig14942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50590

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1710--1773	21	3.1	21	95	2	112	34	12	17	35	1.87
1770--1915	51	2.9	51	81	6	181	45	2	13	39	1.54
2541--2597	18	3.3	18	71	24	59	47	10	15	26	1.78
2600--2659	31	1.9	31	86	10	86	46	6	23	23	1.75
2505--2678	71	2.4	70	75	11	158	48	8	17	24	1.75
2788--2839	26	2.0	26	92	7	88	53	3	15	26	1.59
2832--3122	22	13.9	21	68	19	110	56	5	20	17	1.61
2881--3122	66	3.7	64	76	13	201	56	6	21	16	1.62
11244--11417	62	2.8	62	86	3	242	39	12	21	27	1.88
11368--11453	36	2.4	36	100	0	172	39	12	19	27	1.88
11320--11515	98	2.0	98	95	0	356	40	12	20	27	1.88
11404--11595	62	3.1	62	90	2	298	39	13	21	25	1.89
11243--11577	160	2.1	160	89	2	512	40	12	20	26	1.88
14027--14104	38	2.1	38	87	4	113	33	17	19	29	1.95
14066--14133	29	2.3	30	85	9	88	36	17	14	30	1.90
14028--14158	67	2.0	67	86	6	185	32	18	17	31	1.94
14830--14860	16	1.9	16	100	0	62	32	12	12	41	1.81
14846--15108	35	7.5	35	88	1	393	29	14	20	35	1.92
15057--15160	54	1.9	54	88	3	156	28	16	18	36	1.92
14952--15261	159	1.9	159	90	3	491	29	16	20	34	1.94
15111--15261	35	4.3	36	94	3	238	30	17	19	33	1.94
15009--15232	124	1.8	124	92	1	378	28	16	19	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15111--15284	35	5.0	36	90	4	232	29	17	19	32	1.95
14917--15284	194	1.9	194	88	4	555	29	16	20	33	1.94
26277--26318	10	3.9	11	78	15	52	26	7	2	64	1.32
28230--28309	40	2.0	42	87	5	119	32	8	3	55	1.49
33708--33759	12	4.7	11	79	13	54	25	3	3	67	1.25
36682--36730	17	2.8	17	84	3	53	12	4	10	73	1.22
40093--40122	14	2.1	14	93	0	51	16	46	0	36	1.47
44086--44156	27	2.7	27	91	2	117	54	4	22	18	1.60
44087--44170	26	3.2	25	77	15	89	54	3	22	19	1.59
44183--44266	20	4.1	20	82	10	82	53	5	19	21	1.66
44223--44316	48	2.0	47	89	2	143	56	5	19	19	1.60
44238--44280	14	3.1	14	80	6	61	60	4	16	18	1.52
44287--44385	34	2.9	34	89	1	155	53	2	26	18	1.55
44428--44494	21	3.1	21	72	18	66	50	7	16	25	1.71

Tables:   1

The End!