Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014928.1 Corchorus capsularis cultivar CVL-1 contig14949, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42028

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3113--3159
7
7.0
7
78
9
53
72
2
23
2
1.06
3107--3159
20
2.7
20
78
0
61
71
1
22
3
1.12
10346--10393
24
2.0
24
83
0
60
45
10
4
39
1.58
10354--10402
24
2.1
24
81
7
57
48
10
2
38
1.48
13520--13576
22
2.6
22
77
0
60
36
15
10
36
1.82
13648--13703
22
2.5
22
80
8
60
37
16
5
41
1.71
17598--17644
13
3.5
13
72
16
51
12
25
0
61
1.31
17595--17672
27
2.8
28
84
9
81
15
23
0
61
1.33
17705--17971
21
12.9
21
73
13
175
21
20
5
52
1.65
17717--17929
21
10.3
21
75
14
183
20
20
5
53
1.66
17796--17970
44
4.1
44
74
12
150
21
19
5
54
1.63
17796--17942
22
6.8
22
75
10
115
21
19
5
53
1.65
17945--18001
14
3.9
14
73
15
53
21
15
3
59
1.51
17981--18083
21
5.2
21
74
17
96
17
22
3
56
1.57
18038--18083
20
2.2
21
96
3
85
17
19
4
58
1.55
17932--18111
51
3.5
51
79
15
174
18
20
3
57
1.54
18080--18283
113
1.8
113
89
3
295
15
19
6
57
1.60
18121--18285
16
10.3
16
68
19
94
16
19
6
58
1.59
18215--18324
31
3.2
37
74
20
94
15
20
6
58
1.59
18234--18303
31
2.3
31
87
9
99
15
20
7
57
1.62
18370--18426
24
2.3
25
84
3
80
33
21
3
42
1.70
18761--18841
37
2.2
37
88
0
126
28
18
6
46
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18650--18804
52
3.0
52
98
0
292
25
16
7
50
1.71
20317--20364
19
2.6
19
86
3
71
0
39
0
60
0.97
20319--20364
18
2.5
19
89
6
69
0
39
0
60
0.97
22058--22101
22
2.0
22
95
0
79
56
13
20
9
1.64
25256--25281
13
2.0
13
100
0
52
15
7
7
69
1.35
30410--30441
11
2.9
11
90
0
55
37
0
18
43
1.51
32321--32356
6
6.0
6
90
0
54
27
0
2
69
1.02
36827--36852
13
2.0
13
100
0
52
15
7
7
69
1.35
40028--40094
12
5.5
12
89
3
89
35
13
20
29
1.91

Tables:   1

The End!