Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014929.1 Corchorus capsularis cultivar CVL-1 contig14950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80024

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
277--314
15
2.4
17
82
13
53
57
2
0
39
1.12
3224--3472
134
1.9
133
83
7
326
48
2
10
37
1.53
4055--4138
26
3.2
26
63
9
71
39
8
7
45
1.62
4052--4140
30
3.2
30
60
21
75
40
7
6
44
1.60
4051--4187
53
2.6
53
97
1
258
41
8
6
43
1.60
4269--4399
44
2.9
44
95
2
226
57
3
4
35
1.35
4496--4655
84
1.9
83
89
3
250
52
2
8
36
1.45
5760--5792
11
3.0
11
95
0
57
33
9
0
57
1.30
8695--8746
26
2.0
26
96
0
95
38
13
7
40
1.73
9989--10040
3
17.3
3
95
0
95
30
1
0
67
1.02
10456--10485
15
1.9
16
93
6
53
16
20
10
53
1.71
14027--14106
28
2.8
28
84
5
106
36
12
23
27
1.91
14211--14240
2
15.0
2
100
0
60
50
0
0
50
1.00
19209--19406
108
1.9
106
85
6
276
37
9
11
41
1.73
20869--20913
5
9.0
5
100
0
90
20
0
0
80
0.72
21308--21347
16
2.5
16
87
0
53
45
35
10
10
1.71
21335--21363
6
5.0
6
91
8
51
31
51
17
0
1.45
22134--22178
16
2.9
16
93
3
74
44
40
13
2
1.56
23929--23962
14
2.4
15
85
14
54
23
20
5
50
1.70
25525--25577
12
4.2
12
81
13
70
28
7
1
62
1.33
30673--30701
3
9.7
3
100
0
58
31
0
0
68
0.89
44561--44600
15
2.7
15
88
3
64
50
0
12
37
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44789--44861
31
2.3
32
88
4
112
4
13
35
46
1.63
44789--44863
16
4.8
16
85
6
100
4
13
37
45
1.62
44853--44906
5
10.2
5
88
6
72
0
20
53
25
1.45
52513--52588
32
2.4
31
85
12
93
35
22
11
30
1.90
52592--52650
31
2.0
29
90
6
91
35
11
28
23
1.91
52599--52663
31
2.2
32
81
13
84
40
12
24
23
1.89
53811--53878
27
2.5
27
81
9
77
32
23
16
27
1.96
58291--58358
27
2.5
27
81
9
77
32
23
16
27
1.96
59938--60004
32
2.1
32
97
0
125
29
22
22
25
1.99
60359--60400
16
2.8
15
77
22
52
59
2
28
9
1.41
61646--61774
64
2.0
64
96
0
240
31
15
17
34
1.92
62261--62336
37
2.1
37
100
0
152
32
17
15
34
1.91
70686--70717
2
16.0
2
100
0
64
50
0
0
50
1.00
78462--78531
21
3.3
21
81
2
77
41
15
7
35
1.75

Tables:   1

The End!