Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014934.1 Corchorus capsularis cultivar CVL-1 contig14955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45869

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1657--1715
21
2.7
22
89
5
93
37
13
11
37
1.82
1740--1836
22
4.4
22
70
5
70
34
12
9
44
1.74
1865--2134
22
12.1
22
73
11
72
37
16
10
34
1.84
2049--2133
23
3.7
23
85
1
109
38
12
7
41
1.71
2010--2133
45
2.8
45
82
10
139
38
13
8
38
1.76
2008--2280
22
12.6
21
71
11
126
36
13
9
39
1.78
1872--2295
44
9.7
44
72
12
207
36
15
10
37
1.82
2404--2454
22
2.4
22
86
3
77
37
11
9
41
1.75
2413--2457
22
2.0
22
95
0
81
33
13
8
44
1.75
2404--2567
22
7.3
22
69
13
66
32
15
10
40
1.82
2588--2714
22
5.7
22
71
12
98
37
18
7
36
1.80
2750--2837
22
3.9
22
76
8
79
37
20
10
31
1.86
3270--3335
31
2.1
31
86
5
89
50
4
18
27
1.66
7703--7930
91
2.5
93
86
1
325
36
12
17
32
1.88
8017--8100
45
1.9
44
80
4
98
40
22
13
23
1.89
10224--10447
91
2.5
91
86
4
310
35
11
20
33
1.88
10532--10723
104
1.8
100
80
12
226
40
21
11
27
1.87
10693--10764
35
2.1
35
100
0
144
41
23
8
26
1.82
11201--11417
70
3.1
70
93
0
353
38
12
0
48
1.42
12502--12545
23
1.9
23
95
0
79
18
13
22
45
1.84
23717--23755
19
2.1
19
85
0
51
56
5
0
38
1.22
24053--24457
183
2.2
182
82
6
482
36
10
12
40
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26442--26475
2
17.0
2
100
0
68
50
0
0
50
1.00
26921--26959
18
2.1
19
85
4
53
30
43
17
7
1.77
35955--35996
22
2.0
22
85
4
59
40
11
0
47
1.40

Tables:   1

The End!