Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014935.1 Corchorus capsularis cultivar CVL-1 contig14956, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1291
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39


Found at i:151 original size:13 final size:13

Alignment explanation


    Indices: 133--158  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        123 AGATATTAAC

                         
        133 AAAAAAAGAAAAA
          1 AAAAAAAGAAAAA

                         
        146 AAAAAAAGAAAAA
          1 AAAAAAAGAAAAA

        159 TATATATACT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00


Consensus pattern (13 bp):   
AAAAAAAGAAAAA
Done.