genome.fa.s14946.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014946.1 Corchorus capsularis cultivar CVL-1 contig14967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25493

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1185--1308	33	3.7	33	81	10	137	8	25	41	24	1.84
2964--3037	38	1.9	39	91	2	123	21	12	25	40	1.88
5529--5605	39	2.0	39	100	0	154	19	7	31	41	1.80
6952--7024	32	2.3	32	85	0	101	47	5	20	26	1.71
7183--7260	14	5.8	13	71	23	63	60	2	20	16	1.48
7186--7244	25	2.5	23	83	8	66	61	1	20	16	1.44
7189--7551	36	9.6	36	70	20	180	55	3	21	19	1.58
7250--7325	32	2.3	33	91	6	120	55	5	17	22	1.62
7298--7360	26	2.4	26	89	2	99	53	3	15	26	1.57
7308--7371	27	2.5	27	85	7	71	56	4	15	23	1.58
7364--7509	7	20.4	7	73	15	113	57	2	24	15	1.49
7365--7474	22	5.0	22	82	10	129	58	1	25	14	1.47
7364--7453	29	3.1	28	85	7	110	58	1	25	14	1.43
7365--7481	43	2.7	43	84	9	132	57	2	24	15	1.51
7392--7552	35	4.6	34	84	9	191	54	3	25	16	1.57
7541--7597	15	3.9	15	75	13	64	57	5	15	21	1.57
7540--7728	22	8.6	21	70	14	98	55	5	18	21	1.62
7532--7632	29	3.7	28	75	20	81	56	3	18	20	1.57
7532--7719	44	4.1	44	73	15	139	54	4	19	20	1.62
7551--7619	23	2.7	23	80	13	66	59	4	15	20	1.53
7608--7733	22	5.8	22	74	12	134	53	5	19	21	1.66
7685--7756	35	2.0	37	94	5	130	50	5	20	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7691--7765	35	2.1	36	90	5	116	50	6	21	21	1.71
7694--7775	35	2.3	35	87	2	101	51	6	20	21	1.69
7722--7804	21	3.9	21	76	9	80	50	7	20	21	1.72
7722--7843	29	4.2	29	67	16	83	51	6	21	20	1.69
7652--7886	122	1.9	122	81	6	280	51	6	20	20	1.69
10015--10088	27	2.7	27	80	2	76	14	16	21	47	1.82
10176--10200	12	2.1	12	100	0	50	40	8	0	52	1.31
12570--12610	21	2.0	21	85	9	57	19	7	19	53	1.68
13490--13559	21	3.3	22	73	13	74	18	14	5	61	1.52
13493--13582	42	2.1	43	89	2	137	22	15	5	56	1.60
13505--13596	42	2.2	42	82	3	114	20	16	4	58	1.54
13656--13703	7	6.9	7	82	0	60	18	18	8	54	1.68
13654--13729	14	5.4	14	81	9	100	17	19	6	56	1.62
13664--13898	34	7.1	35	70	17	119	17	18	5	58	1.58
13664--13909	7	34.7	7	66	13	65	17	18	5	58	1.57
13760--13969	22	10.3	19	66	25	65	19	20	4	56	1.58
13782--13971	22	9.1	21	73	12	135	19	18	4	56	1.59
13571--13927	191	1.9	189	79	14	412	17	19	4	57	1.57
13784--13967	100	1.8	100	82	6	239	20	19	4	55	1.61
14025--14059	15	2.4	14	90	9	61	14	22	11	51	1.74
14059--14107	14	3.6	14	88	2	55	16	20	4	59	1.53
14067--14107	14	2.9	14	92	0	64	17	17	4	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14765--14815	17	2.9	17	83	13	68	1	17	1	78	0.94
16125--16185	29	2.1	29	93	0	104	16	34	16	32	1.91
17500--17553	25	2.2	25	86	0	72	42	9	16	31	1.80
17713--17787	26	2.8	27	81	2	89	42	29	10	17	1.83
18053--18193	72	1.9	72	84	11	185	51	6	14	27	1.66
18095--18264	45	3.4	45	75	21	178	51	5	15	27	1.65
18095--18195	27	4.1	26	78	15	108	51	5	14	27	1.66
18131--18226	27	3.1	31	79	15	119	51	6	14	28	1.67
18222--18281	32	1.9	30	86	6	84	48	5	18	28	1.69
18060--18301	105	2.3	105	87	6	328	50	6	16	27	1.69
18300--18381	32	2.6	32	77	11	98	52	6	14	26	1.65
18339--18446	52	2.0	53	85	7	148	48	5	18	27	1.70
18230--18429	84	2.4	82	90	4	323	48	5	19	27	1.71
18414--18578	35	4.7	35	90	2	253	52	3	16	27	1.59
18414--18717	70	4.2	69	82	11	294	51	2	19	26	1.61
19647--19684	18	2.1	18	95	0	67	44	18	31	5	1.72
24304--24339	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!