Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014956.1 Corchorus capsularis cultivar CVL-1 contig14977, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6535
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29


Found at i:5022 original size:28 final size:27

Alignment explanation


    Indices: 4984--5042  Score: 93
    Period size: 28  Copynumber: 2.2  Consensus size: 27

       4974 TTTCAGAGAT

                                       
       4984 TTTA-GATTAGCTTATTTATGTGGCTA
          1 TTTATGATTAGCTTATTTATGTGGCTA

                               *        
       5010 TTTATGATGTAGCTTATTTCTGTGGCTA
          1 TTTATGAT-TAGCTTATTTATGTGGCTA

                 
       5038 TTTAT
          1 TTTAT

       5043 CTACCTAGTA


Statistics
Matches: 30,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  26    4  0.13
  27    3  0.10
  28   23  0.77

ACGTcount: A:0.20, C:0.08, G:0.19, T:0.53


Consensus pattern (27 bp):   
TTTATGATTAGCTTATTTATGTGGCTA
Done.