Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014957.1 Corchorus capsularis cultivar CVL-1 contig14978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9182
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:8614 original size:12 final size:12

Alignment explanation


    Indices: 8583--8607  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       8573 GCCGCGCAAC

                        
       8583 ACCGGCCACATG
          1 ACCGGCCACATG

                        
       8595 ACCGGCCACATG
          1 ACCGGCCACATG

             
       8607 A
          1 A

       8608 TTGGCCATCG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.28, C:0.40, G:0.24, T:0.08


Consensus pattern (12 bp):   
ACCGGCCACATG

Found at i:8659 original size:30 final size:30

Alignment explanation


    Indices: 8625--8720  Score: 88
    Period size: 30  Copynumber: 3.1  Consensus size: 30

       8615 TCGCATGCGA

                       *                  
       8625 CATCGCATGGGGCATCCGGCCACAACCGGC
          1 CATCGCATGGGCCATCCGGCCACAACCGGC

                  *          *              *
       8655 CATCGCTTGGCGCACCAACCGGCCACAACCGGA
          1 CATCGCATGG-G--CCATCCGGCCACAACCGGC

                                *           
       8688 CATCG-ATTGGGCCATCCGGACA-AGACCGGC
          1 CATCGCA-TGGGCCATCCGGCCACA-ACCGGC

               
       8718 CAT
          1 CAT

       8721 TTGATCCTTT


Statistics
Matches: 53,  Mismatches: 8, Indels: 10
        0.75            0.11        0.14

Matches are distributed among these distances:
  29    1  0.02
  30   26  0.49
  31    1  0.02
  32    1  0.02
  33   24  0.45

ACGTcount: A:0.23, C:0.39, G:0.27, T:0.11


Consensus pattern (30 bp):   
CATCGCATGGGCCATCCGGCCACAACCGGC
Done.