Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014960.1 Corchorus capsularis cultivar CVL-1 contig14981, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39053

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12451--12517
35
1.9
34
84
6
89
13
28
1
56
1.46
12645--12766
44
3.2
37
77
18
122
20
21
5
52
1.67
12683--12856
22
8.0
22
79
10
187
21
19
5
54
1.64
12541--12760
122
1.8
122
83
5
293
20
21
5
51
1.68
12541--12802
122
2.1
121
81
6
289
20
21
6
51
1.69
12812--12861
24
2.0
24
84
3
64
20
14
4
62
1.47
12677--12899
22
10.2
21
76
10
164
21
20
4
53
1.63
12835--12925
44
2.1
44
87
8
132
18
21
4
54
1.61
12917--13077
7
22.3
7
72
17
116
16
24
1
57
1.46
12895--13230
36
9.1
36
71
21
209
19
21
2
55
1.56
12953--13077
58
2.2
58
89
0
187
16
24
0
59
1.42
12917--13077
22
7.4
22
76
17
117
16
24
1
57
1.46
13067--13121
26
2.1
27
89
3
85
27
14
3
54
1.57
13094--13169
32
2.3
32
88
6
109
22
18
5
53
1.64
13159--13236
14
5.8
13
70
24
63
16
20
2
60
1.48
13175--13233
25
2.5
23
83
8
66
16
20
1
61
1.44
13206--13314
40
2.7
40
92
0
182
22
21
3
53
1.61
17117--17146
11
2.7
11
94
0
51
33
23
0
43
1.54
21164--21199
19
1.9
18
88
5
54
33
22
2
41
1.68
30996--31031
19
1.9
18
88
5
54
33
22
2
41
1.68
38323--38372
25
2.0
25
84
11
66
50
16
10
24
1.75
38613--38685
32
2.3
32
83
4
85
20
23
6
49
1.73

Tables:   1

The End!